Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
Nup88Q8CEC0 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
Nup88Q8CEC0 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Nup88Q8CEC0 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Nup88Q8CEC0 Gm11764-201ENSMUST00000120221 623 ntBASIC17.83■□□□□ 0.44
Nup88Q8CEC0 Gm2756-201ENSMUST00000195851 400 ntBASIC17.83■□□□□ 0.44
Nup88Q8CEC0 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Nup88Q8CEC0 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Nup88Q8CEC0 Gm37305-201ENSMUST00000195714 4279 ntBASIC17.83■□□□□ 0.44
Nup88Q8CEC0 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Nup88Q8CEC0 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Nup88Q8CEC0 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Nup88Q8CEC0 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Nup88Q8CEC0 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Nup88Q8CEC0 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Nup88Q8CEC0 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Nup88Q8CEC0 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Nup88Q8CEC0 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Nup88Q8CEC0 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Nup88Q8CEC0 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 AC127302.2-201ENSMUST00000215212 268 ntBASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Gm18622-201ENSMUST00000219361 595 ntBASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Nup88Q8CEC0 Gm11960-202ENSMUST00000181063 2858 ntBASIC17.81■□□□□ 0.44
Nup88Q8CEC0 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Nup88Q8CEC0 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Nup88Q8CEC0 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Nup88Q8CEC0 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Nup88Q8CEC0 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Nup88Q8CEC0 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Nup88Q8CEC0 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Nup88Q8CEC0 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Nup88Q8CEC0 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Nup88Q8CEC0 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Nup88Q8CEC0 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
Nup88Q8CEC0 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC17.81■□□□□ 0.44
Nup88Q8CEC0 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Nup88Q8CEC0 Gm27702-201ENSMUST00000184512 56 ntBASIC17.81■□□□□ 0.44
Nup88Q8CEC0 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC17.81■□□□□ 0.44
Nup88Q8CEC0 Gm45683-201ENSMUST00000210825 1247 ntBASIC17.81■□□□□ 0.44
Nup88Q8CEC0 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Nup88Q8CEC0 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Nup88Q8CEC0 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Nup88Q8CEC0 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Nup88Q8CEC0 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Nup88Q8CEC0 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Nup88Q8CEC0 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC17.81■□□□□ 0.44
Nup88Q8CEC0 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Nup88Q8CEC0 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC17.81■□□□□ 0.44
Nup88Q8CEC0 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Nup88Q8CEC0 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nup88Q8CEC0 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nup88Q8CEC0 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
Nup88Q8CEC0 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nup88Q8CEC0 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
Nup88Q8CEC0 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Nup88Q8CEC0 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nup88Q8CEC0 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
Nup88Q8CEC0 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Nup88Q8CEC0 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Nup88Q8CEC0 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC17.8■□□□□ 0.44
Nup88Q8CEC0 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nup88Q8CEC0 Gm14026-201ENSMUST00000120625 1789 ntBASIC17.8■□□□□ 0.44
Nup88Q8CEC0 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nup88Q8CEC0 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nup88Q8CEC0 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nup88Q8CEC0 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nup88Q8CEC0 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Nup88Q8CEC0 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Nup88Q8CEC0 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nup88Q8CEC0 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nup88Q8CEC0 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Nup88Q8CEC0 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 132.6 ms