Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp47Q8BY87 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp47Q8BY87 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp47Q8BY87 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp47Q8BY87 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp47Q8BY87 Tcf21-202ENSMUST00000218002 1788 ntBASIC21.25■□□□□ 0.99
Usp47Q8BY87 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp47Q8BY87 Shroom3-211ENSMUST00000225438 5742 ntBASIC21.25■□□□□ 0.99
Usp47Q8BY87 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Usp47Q8BY87 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp47Q8BY87 Gm25287-201ENSMUST00000103846 110 ntBASIC21.25■□□□□ 0.99
Usp47Q8BY87 Gm22918-201ENSMUST00000103855 110 ntBASIC21.25■□□□□ 0.99
Usp47Q8BY87 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp47Q8BY87 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp47Q8BY87 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp47Q8BY87 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
Usp47Q8BY87 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC21.25■□□□□ 0.99
Usp47Q8BY87 AC154621.1-201ENSMUST00000226155 1119 ntBASIC21.25■□□□□ 0.99
Usp47Q8BY87 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Usp47Q8BY87 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp47Q8BY87 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Usp47Q8BY87 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Usp47Q8BY87 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp47Q8BY87 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Usp47Q8BY87 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Usp47Q8BY87 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp47Q8BY87 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp47Q8BY87 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Usp47Q8BY87 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Usp47Q8BY87 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC21.25■□□□□ 0.99
Usp47Q8BY87 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Usp47Q8BY87 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp47Q8BY87 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC21.25■□□□□ 0.99
Usp47Q8BY87 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp47Q8BY87 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp47Q8BY87 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp47Q8BY87 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp47Q8BY87 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp47Q8BY87 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC21.24■□□□□ 0.99
Usp47Q8BY87 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp47Q8BY87 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
Usp47Q8BY87 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Usp47Q8BY87 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp47Q8BY87 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp47Q8BY87 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Usp47Q8BY87 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp47Q8BY87 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp47Q8BY87 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp47Q8BY87 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp47Q8BY87 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp47Q8BY87 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC21.24■□□□□ 0.99
Usp47Q8BY87 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Usp47Q8BY87 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
Usp47Q8BY87 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Usp47Q8BY87 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp47Q8BY87 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp47Q8BY87 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp47Q8BY87 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp47Q8BY87 Gm13464-201ENSMUST00000119418 935 ntBASIC21.23■□□□□ 0.99
Usp47Q8BY87 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Usp47Q8BY87 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Usp47Q8BY87 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC21.23■□□□□ 0.99
Usp47Q8BY87 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp47Q8BY87 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Usp47Q8BY87 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Usp47Q8BY87 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp47Q8BY87 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp47Q8BY87 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp47Q8BY87 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Usp47Q8BY87 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp47Q8BY87 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp47Q8BY87 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Usp47Q8BY87 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp47Q8BY87 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp47Q8BY87 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp47Q8BY87 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp47Q8BY87 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp47Q8BY87 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp47Q8BY87 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp47Q8BY87 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp47Q8BY87 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC21.23■□□□□ 0.99
Usp47Q8BY87 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp47Q8BY87 Gm13616-201ENSMUST00000120600 222 ntBASIC21.23■□□□□ 0.99
Usp47Q8BY87 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
Usp47Q8BY87 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Usp47Q8BY87 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC21.23■□□□□ 0.99
Usp47Q8BY87 AC131710.1-201ENSMUST00000228336 990 ntBASIC21.23■□□□□ 0.99
Usp47Q8BY87 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp47Q8BY87 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC21.23■□□□□ 0.99
Usp47Q8BY87 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
Usp47Q8BY87 AC164565.1-201ENSMUST00000217520 1484 ntBASIC21.22■□□□□ 0.99
Usp47Q8BY87 Gm21009-201ENSMUST00000197169 1669 ntBASIC21.22■□□□□ 0.99
Usp47Q8BY87 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usp47Q8BY87 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Usp47Q8BY87 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usp47Q8BY87 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Usp47Q8BY87 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usp47Q8BY87 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Usp47Q8BY87 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usp47Q8BY87 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 16 ms