Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Trim28Q62318 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trim28Q62318 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim28Q62318 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC19.53■□□□□ 0.72
Trim28Q62318 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trim28Q62318 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim28Q62318 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC19.53■□□□□ 0.72
Trim28Q62318 Gm43352-201ENSMUST00000196419 3065 ntBASIC19.53■□□□□ 0.72
Trim28Q62318 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim28Q62318 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Trim28Q62318 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim28Q62318 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Trim28Q62318 Gm6944-201ENSMUST00000182449 1006 ntBASIC19.52■□□□□ 0.72
Trim28Q62318 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Trim28Q62318 Olfr286-202ENSMUST00000205305 969 ntBASIC19.52■□□□□ 0.72
Trim28Q62318 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim28Q62318 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim28Q62318 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim28Q62318 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Trim28Q62318 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC19.52■□□□□ 0.72
Trim28Q62318 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim28Q62318 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
Trim28Q62318 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Trim28Q62318 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
Trim28Q62318 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
Trim28Q62318 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Trim28Q62318 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim28Q62318 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trim28Q62318 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
Trim28Q62318 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim28Q62318 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
Trim28Q62318 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC19.51■□□□□ 0.71
Trim28Q62318 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim28Q62318 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim28Q62318 Gm13823-201ENSMUST00000119930 345 ntBASIC19.51■□□□□ 0.71
Trim28Q62318 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC19.51■□□□□ 0.71
Trim28Q62318 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim28Q62318 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim28Q62318 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Trim28Q62318 Gm13517-201ENSMUST00000120782 1495 ntBASIC19.51■□□□□ 0.71
Trim28Q62318 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim28Q62318 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim28Q62318 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC19.51■□□□□ 0.71
Trim28Q62318 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim28Q62318 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trim28Q62318 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Trim28Q62318 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim28Q62318 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim28Q62318 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim28Q62318 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Trim28Q62318 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim28Q62318 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC19.5■□□□□ 0.71
Trim28Q62318 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim28Q62318 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
Trim28Q62318 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim28Q62318 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC19.5■□□□□ 0.71
Trim28Q62318 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
Trim28Q62318 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC19.5■□□□□ 0.71
Trim28Q62318 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC19.5■□□□□ 0.71
Trim28Q62318 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim28Q62318 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim28Q62318 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim28Q62318 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim28Q62318 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
Trim28Q62318 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Trim28Q62318 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim28Q62318 Gm14780-201ENSMUST00000118387 2737 ntBASIC19.49■□□□□ 0.71
Trim28Q62318 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim28Q62318 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC19.49■□□□□ 0.71
Trim28Q62318 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
Trim28Q62318 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC19.49■□□□□ 0.71
Trim28Q62318 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim28Q62318 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim28Q62318 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC19.49■□□□□ 0.71
Trim28Q62318 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC19.49■□□□□ 0.71
Trim28Q62318 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim28Q62318 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Trim28Q62318 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim28Q62318 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim28Q62318 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Trim28Q62318 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim28Q62318 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim28Q62318 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC19.48■□□□□ 0.71
Trim28Q62318 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC19.48■□□□□ 0.71
Trim28Q62318 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Trim28Q62318 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim28Q62318 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim28Q62318 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim28Q62318 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Trim28Q62318 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC19.48■□□□□ 0.71
Trim28Q62318 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC19.48■□□□□ 0.71
Trim28Q62318 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
Trim28Q62318 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Trim28Q62318 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC19.48■□□□□ 0.71
Trim28Q62318 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim28Q62318 Gm45098-201ENSMUST00000207179 657 ntBASIC19.48■□□□□ 0.71
Trim28Q62318 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC19.48■□□□□ 0.71
Trim28Q62318 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim28Q62318 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim28Q62318 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms