Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Shmt1P50431 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Shmt1P50431 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Shmt1P50431 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Shmt1P50431 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Shmt1P50431 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Shmt1P50431 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Shmt1P50431 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Shmt1P50431 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Shmt1P50431 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Shmt1P50431 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Shmt1P50431 Gm26308-201ENSMUST00000157768 69 ntBASIC15.95■□□□□ 0.14
Shmt1P50431 Gm2272-201ENSMUST00000194903 582 ntBASIC15.95■□□□□ 0.14
Shmt1P50431 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC15.95■□□□□ 0.14
Shmt1P50431 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC15.95■□□□□ 0.14
Shmt1P50431 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC15.95■□□□□ 0.14
Shmt1P50431 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Shmt1P50431 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Shmt1P50431 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Shmt1P50431 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Shmt1P50431 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Shmt1P50431 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Shmt1P50431 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Shmt1P50431 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Shmt1P50431 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC15.95■□□□□ 0.14
Shmt1P50431 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
Shmt1P50431 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC15.94■□□□□ 0.14
Shmt1P50431 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
Shmt1P50431 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Shmt1P50431 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
Shmt1P50431 Zkscan3-208ENSMUST00000224820 5398 ntBASIC15.94■□□□□ 0.14
Shmt1P50431 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Shmt1P50431 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Shmt1P50431 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Shmt1P50431 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Shmt1P50431 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Shmt1P50431 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Shmt1P50431 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
Shmt1P50431 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC15.94■□□□□ 0.14
Shmt1P50431 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC15.94■□□□□ 0.14
Shmt1P50431 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC15.94■□□□□ 0.14
Shmt1P50431 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC15.94■□□□□ 0.14
Shmt1P50431 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC15.94■□□□□ 0.14
Shmt1P50431 Gm10154-201ENSMUST00000084445 354 ntBASIC15.94■□□□□ 0.14
Shmt1P50431 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Shmt1P50431 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Shmt1P50431 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Shmt1P50431 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
Shmt1P50431 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Shmt1P50431 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Shmt1P50431 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Shmt1P50431 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Shmt1P50431 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Shmt1P50431 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Shmt1P50431 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
Shmt1P50431 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Shmt1P50431 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Shmt1P50431 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC15.94■□□□□ 0.14
Shmt1P50431 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Shmt1P50431 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Shmt1P50431 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Shmt1P50431 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Shmt1P50431 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Shmt1P50431 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC15.93■□□□□ 0.14
Shmt1P50431 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Shmt1P50431 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
Shmt1P50431 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
Shmt1P50431 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Shmt1P50431 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
Shmt1P50431 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Shmt1P50431 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Shmt1P50431 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
Shmt1P50431 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
Shmt1P50431 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
Shmt1P50431 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Shmt1P50431 Rpph1-201ENSMUST00000175096 319 ntBASIC15.93■□□□□ 0.14
Shmt1P50431 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC15.93■□□□□ 0.14
Shmt1P50431 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Shmt1P50431 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC15.93■□□□□ 0.14
Shmt1P50431 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Shmt1P50431 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC15.93■□□□□ 0.14
Shmt1P50431 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Shmt1P50431 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Shmt1P50431 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Shmt1P50431 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
Shmt1P50431 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
Shmt1P50431 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Shmt1P50431 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Shmt1P50431 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC15.93■□□□□ 0.14
Shmt1P50431 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Shmt1P50431 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Shmt1P50431 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC15.92■□□□□ 0.14
Shmt1P50431 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC15.92■□□□□ 0.14
Shmt1P50431 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Shmt1P50431 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Shmt1P50431 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Shmt1P50431 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Shmt1P50431 Gm45212-201ENSMUST00000205831 3403 ntBASIC15.92■□□□□ 0.14
Shmt1P50431 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Shmt1P50431 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms