Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC21.16■□□□□ 0.98
SCN4AP35499 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC21.16■□□□□ 0.98
SCN4AP35499 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
SCN4AP35499 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC21.16■□□□□ 0.98
SCN4AP35499 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
SCN4AP35499 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
SCN4AP35499 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SCN4AP35499 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SCN4AP35499 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
SCN4AP35499 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SCN4AP35499 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SCN4AP35499 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SCN4AP35499 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC21.16■□□□□ 0.98
SCN4AP35499 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.16■□□□□ 0.98
SCN4AP35499 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SCN4AP35499 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SCN4AP35499 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SCN4AP35499 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SCN4AP35499 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC21.15■□□□□ 0.98
SCN4AP35499 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC21.15■□□□□ 0.98
SCN4AP35499 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
SCN4AP35499 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC21.15■□□□□ 0.98
SCN4AP35499 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC21.15■□□□□ 0.98
SCN4AP35499 OR7E47P-204ENST00000575924 449 ntBASIC21.15■□□□□ 0.98
SCN4AP35499 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC21.15■□□□□ 0.98
SCN4AP35499 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC21.15■□□□□ 0.98
SCN4AP35499 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC21.15■□□□□ 0.98
SCN4AP35499 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SCN4AP35499 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
SCN4AP35499 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SCN4AP35499 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC21.15■□□□□ 0.98
SCN4AP35499 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SCN4AP35499 AC132938.6-201ENST00000623828 1655 ntBASIC21.15■□□□□ 0.98
SCN4AP35499 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SCN4AP35499 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.15■□□□□ 0.98
SCN4AP35499 NKTR-203ENST00000442970 646 ntTSL 2 BASIC21.15■□□□□ 0.98
SCN4AP35499 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
SCN4AP35499 GAPDHP21-201ENST00000450301 1010 ntBASIC21.15■□□□□ 0.98
SCN4AP35499 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC21.15■□□□□ 0.98
SCN4AP35499 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC21.15■□□□□ 0.98
SCN4AP35499 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC21.15■□□□□ 0.98
SCN4AP35499 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SCN4AP35499 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SCN4AP35499 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.15■□□□□ 0.98
SCN4AP35499 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SCN4AP35499 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
SCN4AP35499 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SCN4AP35499 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
SCN4AP35499 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC21.14■□□□□ 0.98
SCN4AP35499 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
SCN4AP35499 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
SCN4AP35499 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
SCN4AP35499 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC21.14■□□□□ 0.98
SCN4AP35499 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
SCN4AP35499 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SCN4AP35499 EDF1-203ENST00000371649 790 ntTSL 2 BASIC21.14■□□□□ 0.97
SCN4AP35499 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
SCN4AP35499 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SCN4AP35499 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
SCN4AP35499 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SCN4AP35499 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
SCN4AP35499 FAM207CP-201ENST00000443486 507 ntBASIC21.14■□□□□ 0.97
SCN4AP35499 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC21.14■□□□□ 0.97
SCN4AP35499 AC051619.7-201ENST00000568314 623 ntBASIC21.14■□□□□ 0.97
SCN4AP35499 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
SCN4AP35499 AC132938.5-201ENST00000624980 1813 ntBASIC21.14■□□□□ 0.97
SCN4AP35499 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SCN4AP35499 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.14■□□□□ 0.97
SCN4AP35499 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SCN4AP35499 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
SCN4AP35499 AL121761.2-201ENST00000598007 1648 ntBASIC21.14■□□□□ 0.97
SCN4AP35499 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
SCN4AP35499 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SCN4AP35499 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN4AP35499 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN4AP35499 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC21.13■□□□□ 0.97
SCN4AP35499 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN4AP35499 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SCN4AP35499 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN4AP35499 RN7SL204P-201ENST00000582831 262 ntBASIC21.13■□□□□ 0.97
SCN4AP35499 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN4AP35499 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC21.13■□□□□ 0.97
SCN4AP35499 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SCN4AP35499 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN4AP35499 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.13■□□□□ 0.97
SCN4AP35499 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN4AP35499 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SCN4AP35499 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SCN4AP35499 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC21.13■□□□□ 0.97
SCN4AP35499 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC21.13■□□□□ 0.97
SCN4AP35499 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN4AP35499 FUT8-AS1-201ENST00000621019 1521 ntBASIC21.13■□□□□ 0.97
SCN4AP35499 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN4AP35499 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC21.13■□□□□ 0.97
SCN4AP35499 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
SCN4AP35499 HLA-V-201ENST00000429037 534 ntBASIC21.13■□□□□ 0.97
SCN4AP35499 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC21.13■□□□□ 0.97
SCN4AP35499 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC21.13■□□□□ 0.97
SCN4AP35499 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC21.13■□□□□ 0.97
SCN4AP35499 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms