Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Rbfox2-208ENSMUST00000227930 1218 ntBASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Usp40Q8BWR4 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Usp40Q8BWR4 Gm5049-201ENSMUST00000195878 1590 ntBASIC20.68■□□□□ 0.9
Usp40Q8BWR4 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Usp40Q8BWR4 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp40Q8BWR4 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp40Q8BWR4 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
Usp40Q8BWR4 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp40Q8BWR4 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp40Q8BWR4 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp40Q8BWR4 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp40Q8BWR4 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Usp40Q8BWR4 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Usp40Q8BWR4 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp40Q8BWR4 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Usp40Q8BWR4 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Usp40Q8BWR4 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp40Q8BWR4 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp40Q8BWR4 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp40Q8BWR4 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp40Q8BWR4 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp40Q8BWR4 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp40Q8BWR4 AC159621.2-201ENSMUST00000223519 1326 ntBASIC20.68■□□□□ 0.9
Usp40Q8BWR4 Gm42901-201ENSMUST00000197735 3171 ntBASIC20.68■□□□□ 0.9
Usp40Q8BWR4 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp40Q8BWR4 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp40Q8BWR4 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp40Q8BWR4 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp40Q8BWR4 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp40Q8BWR4 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC20.67■□□□□ 0.9
Usp40Q8BWR4 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp40Q8BWR4 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp40Q8BWR4 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp40Q8BWR4 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC20.67■□□□□ 0.9
Usp40Q8BWR4 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC20.67■□□□□ 0.9
Usp40Q8BWR4 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC20.67■□□□□ 0.9
Usp40Q8BWR4 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp40Q8BWR4 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp40Q8BWR4 Gm13517-201ENSMUST00000120782 1495 ntBASIC20.67■□□□□ 0.9
Usp40Q8BWR4 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp40Q8BWR4 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Usp40Q8BWR4 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC20.67■□□□□ 0.9
Usp40Q8BWR4 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Usp40Q8BWR4 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Usp40Q8BWR4 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Gm18049-201ENSMUST00000208909 581 ntBASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp40Q8BWR4 AC164565.1-201ENSMUST00000217520 1484 ntBASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Gm27528-202ENSMUST00000222916 2012 ntBASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp40Q8BWR4 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp40Q8BWR4 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp40Q8BWR4 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp40Q8BWR4 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp40Q8BWR4 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
Usp40Q8BWR4 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp40Q8BWR4 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC20.65■□□□□ 0.9
Usp40Q8BWR4 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC20.65■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 53.5 ms