Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trav5d-4Q5R1F6 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trav5d-4Q5R1F6 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
Trav5d-4Q5R1F6 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trav5d-4Q5R1F6 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC13.05□□□□□ -0.32
Trav5d-4Q5R1F6 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC13.05□□□□□ -0.32
Trav5d-4Q5R1F6 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trav5d-4Q5R1F6 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trav5d-4Q5R1F6 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC13.05□□□□□ -0.32
Trav5d-4Q5R1F6 Gm7556-201ENSMUST00000201178 1084 ntBASIC13.05□□□□□ -0.32
Trav5d-4Q5R1F6 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC13.05□□□□□ -0.32
Trav5d-4Q5R1F6 AC159106.1-201ENSMUST00000224421 690 ntBASIC13.05□□□□□ -0.32
Trav5d-4Q5R1F6 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trav5d-4Q5R1F6 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trav5d-4Q5R1F6 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trav5d-4Q5R1F6 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trav5d-4Q5R1F6 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC13.05□□□□□ -0.32
Trav5d-4Q5R1F6 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Trav5d-4Q5R1F6 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trav5d-4Q5R1F6 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trav5d-4Q5R1F6 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trav5d-4Q5R1F6 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trav5d-4Q5R1F6 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Gm8318-201ENSMUST00000182954 872 ntBASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 AC154757.1-201ENSMUST00000228289 336 ntBASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC13.04□□□□□ -0.32
Trav5d-4Q5R1F6 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 Umpk-ps-201ENSMUST00000211897 827 ntBASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC13.03□□□□□ -0.32
Trav5d-4Q5R1F6 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trav5d-4Q5R1F6 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trav5d-4Q5R1F6 Gm37305-201ENSMUST00000195714 4279 ntBASIC13.02□□□□□ -0.32
Trav5d-4Q5R1F6 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC13.02□□□□□ -0.32
Trav5d-4Q5R1F6 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trav5d-4Q5R1F6 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trav5d-4Q5R1F6 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Trav5d-4Q5R1F6 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trav5d-4Q5R1F6 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav5d-4Q5R1F6 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC13.02□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms