Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Upf3bQ3ULL6 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Upf3bQ3ULL6 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Upf3bQ3ULL6 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Upf3bQ3ULL6 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Upf3bQ3ULL6 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Upf3bQ3ULL6 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Upf3bQ3ULL6 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
Upf3bQ3ULL6 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
Upf3bQ3ULL6 Gm5366-201ENSMUST00000215494 1338 ntBASIC16.21■□□□□ 0.19
Upf3bQ3ULL6 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3bQ3ULL6 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Upf3bQ3ULL6 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3bQ3ULL6 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3bQ3ULL6 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC16.21■□□□□ 0.19
Upf3bQ3ULL6 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3bQ3ULL6 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC16.21■□□□□ 0.19
Upf3bQ3ULL6 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3bQ3ULL6 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3bQ3ULL6 Gm27300-201ENSMUST00000184085 97 ntBASIC16.21■□□□□ 0.19
Upf3bQ3ULL6 Gm27335-201ENSMUST00000184758 97 ntBASIC16.21■□□□□ 0.19
Upf3bQ3ULL6 Psmb5-202ENSMUST00000227257 622 ntBASIC16.21■□□□□ 0.19
Upf3bQ3ULL6 CT009510.1-201ENSMUST00000227972 270 ntBASIC16.21■□□□□ 0.19
Upf3bQ3ULL6 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Upf3bQ3ULL6 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3bQ3ULL6 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3bQ3ULL6 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Upf3bQ3ULL6 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
Upf3bQ3ULL6 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.18
Upf3bQ3ULL6 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 AC122901.1-201ENSMUST00000214203 1790 ntBASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Upf3bQ3ULL6 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Upf3bQ3ULL6 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Upf3bQ3ULL6 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3bQ3ULL6 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3bQ3ULL6 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Upf3bQ3ULL6 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3bQ3ULL6 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3bQ3ULL6 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC16.19■□□□□ 0.18
Upf3bQ3ULL6 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC16.19■□□□□ 0.18
Upf3bQ3ULL6 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Upf3bQ3ULL6 Gm14140-201ENSMUST00000119999 995 ntBASIC16.19■□□□□ 0.18
Upf3bQ3ULL6 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC16.19■□□□□ 0.18
Upf3bQ3ULL6 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3bQ3ULL6 Gm18246-201ENSMUST00000221023 728 ntBASIC16.19■□□□□ 0.18
Upf3bQ3ULL6 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3bQ3ULL6 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3bQ3ULL6 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC16.19■□□□□ 0.18
Upf3bQ3ULL6 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3bQ3ULL6 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Upf3bQ3ULL6 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC16.19■□□□□ 0.18
Upf3bQ3ULL6 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Gm18206-201ENSMUST00000207027 926 ntBASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Gm5364-201ENSMUST00000216789 889 ntBASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC16.18■□□□□ 0.18
Upf3bQ3ULL6 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms