Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Usp47Q8BY87 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Usp47Q8BY87 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Usp47Q8BY87 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
Usp47Q8BY87 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC21.33■■□□□ 1.01
Usp47Q8BY87 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Usp47Q8BY87 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Usp47Q8BY87 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
Usp47Q8BY87 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Usp47Q8BY87 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1.01
Usp47Q8BY87 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Usp47Q8BY87 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Usp47Q8BY87 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
Usp47Q8BY87 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Usp47Q8BY87 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC21.33■■□□□ 1
Usp47Q8BY87 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC21.33■■□□□ 1
Usp47Q8BY87 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC21.33■■□□□ 1
Usp47Q8BY87 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1
Usp47Q8BY87 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC21.33■■□□□ 1
Usp47Q8BY87 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC21.33■■□□□ 1
Usp47Q8BY87 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC21.33■■□□□ 1
Usp47Q8BY87 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
Usp47Q8BY87 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Usp47Q8BY87 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
Usp47Q8BY87 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
Usp47Q8BY87 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
Usp47Q8BY87 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Usp47Q8BY87 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC21.32■■□□□ 1
Usp47Q8BY87 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Usp47Q8BY87 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC21.32■■□□□ 1
Usp47Q8BY87 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Usp47Q8BY87 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Usp47Q8BY87 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Usp47Q8BY87 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Usp47Q8BY87 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC21.32■■□□□ 1
Usp47Q8BY87 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Usp47Q8BY87 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC21.32■■□□□ 1
Usp47Q8BY87 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC21.32■■□□□ 1
Usp47Q8BY87 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC21.32■■□□□ 1
Usp47Q8BY87 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Usp47Q8BY87 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Usp47Q8BY87 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
Usp47Q8BY87 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Usp47Q8BY87 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Usp47Q8BY87 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Usp47Q8BY87 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Usp47Q8BY87 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Usp47Q8BY87 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Usp47Q8BY87 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC21.31■■□□□ 1
Usp47Q8BY87 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
Usp47Q8BY87 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Usp47Q8BY87 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
Usp47Q8BY87 Gm12017-201ENSMUST00000122453 1003 ntBASIC21.31■■□□□ 1
Usp47Q8BY87 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC21.31■■□□□ 1
Usp47Q8BY87 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC21.31■■□□□ 1
Usp47Q8BY87 Klk2-ps-201ENSMUST00000205342 571 ntBASIC21.31■■□□□ 1
Usp47Q8BY87 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC21.31■■□□□ 1
Usp47Q8BY87 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Usp47Q8BY87 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Usp47Q8BY87 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC21.31■■□□□ 1
Usp47Q8BY87 Gm6018-201ENSMUST00000216090 1306 ntBASIC21.31■■□□□ 1
Usp47Q8BY87 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC21.31■■□□□ 1
Usp47Q8BY87 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC21.31■■□□□ 1
Usp47Q8BY87 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
Usp47Q8BY87 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Usp47Q8BY87 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Usp47Q8BY87 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Usp47Q8BY87 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Usp47Q8BY87 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Usp47Q8BY87 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC21.3■■□□□ 1
Usp47Q8BY87 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Usp47Q8BY87 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC21.3■■□□□ 1
Usp47Q8BY87 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Usp47Q8BY87 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Usp47Q8BY87 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC21.3■■□□□ 1
Usp47Q8BY87 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Usp47Q8BY87 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Usp47Q8BY87 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC21.3■■□□□ 1
Usp47Q8BY87 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC21.3■■□□□ 1
Usp47Q8BY87 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC21.3■■□□□ 1
Usp47Q8BY87 Gm5312-201ENSMUST00000203728 547 ntBASIC21.3■■□□□ 1
Usp47Q8BY87 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC21.3■■□□□ 1
Usp47Q8BY87 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
Usp47Q8BY87 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Usp47Q8BY87 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Usp47Q8BY87 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Usp47Q8BY87 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Usp47Q8BY87 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Usp47Q8BY87 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Usp47Q8BY87 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC21.3■■□□□ 1
Usp47Q8BY87 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Usp47Q8BY87 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
Usp47Q8BY87 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC21.3■■□□□ 1
Usp47Q8BY87 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC21.3■■□□□ 1
Usp47Q8BY87 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Usp47Q8BY87 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Usp47Q8BY87 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC21.29■■□□□ 1
Usp47Q8BY87 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC21.29■■□□□ 1
Usp47Q8BY87 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC21.29■■□□□ 1
Usp47Q8BY87 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 11.8 ms