Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Six4Q61321 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Six4Q61321 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC15.3■□□□□ 0.04
Six4Q61321 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Six4Q61321 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
Six4Q61321 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Six4Q61321 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Six4Q61321 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Six4Q61321 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Six4Q61321 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Six4Q61321 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Six4Q61321 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
Six4Q61321 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Six4Q61321 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Six4Q61321 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Six4Q61321 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Six4Q61321 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Six4Q61321 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Six4Q61321 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Six4Q61321 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Six4Q61321 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Six4Q61321 Gm11779-201ENSMUST00000118541 368 ntBASIC15.29■□□□□ 0.04
Six4Q61321 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
Six4Q61321 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC15.29■□□□□ 0.04
Six4Q61321 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC15.29■□□□□ 0.04
Six4Q61321 Gm6443-201ENSMUST00000203599 874 ntBASIC15.29■□□□□ 0.04
Six4Q61321 Gm30437-201ENSMUST00000206086 1201 ntBASIC15.29■□□□□ 0.04
Six4Q61321 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Six4Q61321 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC15.29■□□□□ 0.04
Six4Q61321 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
Six4Q61321 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Six4Q61321 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Six4Q61321 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Six4Q61321 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Six4Q61321 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Six4Q61321 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Six4Q61321 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Six4Q61321 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Six4Q61321 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Six4Q61321 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Six4Q61321 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Six4Q61321 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Six4Q61321 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Six4Q61321 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Six4Q61321 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Six4Q61321 Zkscan3-208ENSMUST00000224820 5398 ntBASIC15.28■□□□□ 0.04
Six4Q61321 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Six4Q61321 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Six4Q61321 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Six4Q61321 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Six4Q61321 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Six4Q61321 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Six4Q61321 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Six4Q61321 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
Six4Q61321 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
Six4Q61321 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC15.28■□□□□ 0.04
Six4Q61321 Gm12260-201ENSMUST00000122447 411 ntBASIC15.28■□□□□ 0.04
Six4Q61321 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Six4Q61321 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Six4Q61321 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Six4Q61321 Gm17968-201ENSMUST00000194902 784 ntBASIC15.28■□□□□ 0.04
Six4Q61321 Gm44945-201ENSMUST00000206764 1187 ntBASIC15.28■□□□□ 0.04
Six4Q61321 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Six4Q61321 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Six4Q61321 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC15.28■□□□□ 0.04
Six4Q61321 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Six4Q61321 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Six4Q61321 Gm43195-201ENSMUST00000200614 2332 ntBASIC15.28■□□□□ 0.04
Six4Q61321 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC15.28■□□□□ 0.04
Six4Q61321 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Six4Q61321 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Six4Q61321 Gm14780-201ENSMUST00000118387 2737 ntBASIC15.28■□□□□ 0.04
Six4Q61321 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Six4Q61321 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Six4Q61321 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Six4Q61321 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Six4Q61321 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Six4Q61321 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Six4Q61321 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Six4Q61321 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Six4Q61321 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Six4Q61321 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Six4Q61321 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Six4Q61321 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Six4Q61321 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Six4Q61321 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Six4Q61321 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Six4Q61321 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Six4Q61321 Gm12008-201ENSMUST00000117791 755 ntBASIC15.27■□□□□ 0.04
Six4Q61321 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Six4Q61321 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Six4Q61321 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC15.27■□□□□ 0.04
Six4Q61321 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Six4Q61321 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Six4Q61321 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Six4Q61321 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Six4Q61321 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Six4Q61321 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Six4Q61321 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Six4Q61321 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms