Protein–RNA interactions for Protein: Q5R1B6

Trav8d-2, T cell receptor alpha variable 8D-2 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-2Q5R1B6 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Trav8d-2Q5R1B6 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Trav8d-2Q5R1B6 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 Gm45606-201ENSMUST00000209836 2795 ntBASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 Gm45384-201ENSMUST00000210451 277 ntBASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 Shd-206ENSMUST00000225145 998 ntBASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trav8d-2Q5R1B6 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Gm15163-201ENSMUST00000120749 1302 ntBASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Gm23984-201ENSMUST00000157139 203 ntBASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Gm25857-201ENSMUST00000082788 129 ntBASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trav8d-2Q5R1B6 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav8d-2Q5R1B6 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav8d-2Q5R1B6 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav8d-2Q5R1B6 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Trav8d-2Q5R1B6 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav8d-2Q5R1B6 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Trav8d-2Q5R1B6 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav8d-2Q5R1B6 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav8d-2Q5R1B6 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC14.68□□□□□ -0.06
Trav8d-2Q5R1B6 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Trav8d-2Q5R1B6 Gm20445-201ENSMUST00000061905 565 ntBASIC14.68□□□□□ -0.06
Trav8d-2Q5R1B6 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
Trav8d-2Q5R1B6 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
Trav8d-2Q5R1B6 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav8d-2Q5R1B6 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav8d-2Q5R1B6 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav8d-2Q5R1B6 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav8d-2Q5R1B6 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav8d-2Q5R1B6 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav8d-2Q5R1B6 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav8d-2Q5R1B6 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav8d-2Q5R1B6 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav8d-2Q5R1B6 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav8d-2Q5R1B6 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav8d-2Q5R1B6 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Trav8d-2Q5R1B6 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trav8d-2Q5R1B6 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav8d-2Q5R1B6 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav8d-2Q5R1B6 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trav8d-2Q5R1B6 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Trav8d-2Q5R1B6 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trav8d-2Q5R1B6 Gm15653-201ENSMUST00000119247 907 ntBASIC14.67□□□□□ -0.06
Trav8d-2Q5R1B6 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav8d-2Q5R1B6 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trav8d-2Q5R1B6 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trav8d-2Q5R1B6 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC14.67□□□□□ -0.06
Trav8d-2Q5R1B6 Gm18018-201ENSMUST00000198273 408 ntBASIC14.67□□□□□ -0.06
Trav8d-2Q5R1B6 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav8d-2Q5R1B6 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Trav8d-2Q5R1B6 Gm6180-201ENSMUST00000065243 498 ntBASIC14.67□□□□□ -0.06
Trav8d-2Q5R1B6 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav8d-2Q5R1B6 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav8d-2Q5R1B6 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms