Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Gm43347-201ENSMUST00000200226 580 ntBASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Gm30437-201ENSMUST00000206086 1201 ntBASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col28a1Q2UY11 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Gm12895-201ENSMUST00000122214 226 ntBASIC14.75□□□□□ -0.05
Col28a1Q2UY11 AW822252-206ENSMUST00000208904 237 ntBASIC14.75□□□□□ -0.05
Col28a1Q2UY11 AC114585.2-202ENSMUST00000228094 426 ntBASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Fbxl12-205ENSMUST00000140702 1555 ntBASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col28a1Q2UY11 Sorbs3-204ENSMUST00000227929 2460 ntBASIC14.74□□□□□ -0.05
Col28a1Q2UY11 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col28a1Q2UY11 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Col28a1Q2UY11 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col28a1Q2UY11 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col28a1Q2UY11 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
Col28a1Q2UY11 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC14.74□□□□□ -0.05
Col28a1Q2UY11 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC14.74□□□□□ -0.05
Col28a1Q2UY11 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col28a1Q2UY11 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC14.74□□□□□ -0.05
Col28a1Q2UY11 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Col28a1Q2UY11 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC14.74□□□□□ -0.05
Col28a1Q2UY11 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col28a1Q2UY11 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col28a1Q2UY11 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col28a1Q2UY11 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col28a1Q2UY11 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col28a1Q2UY11 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col28a1Q2UY11 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col28a1Q2UY11 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Gm10605-202ENSMUST00000183019 3198 ntBASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col28a1Q2UY11 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms