Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx1P18111 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx1P18111 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Cdx1P18111 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
Cdx1P18111 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx1P18111 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx1P18111 Gm18958-201ENSMUST00000174258 762 ntBASIC12.29□□□□□ -0.44
Cdx1P18111 Gm28033-201ENSMUST00000184224 96 ntBASIC12.29□□□□□ -0.44
Cdx1P18111 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC12.29□□□□□ -0.44
Cdx1P18111 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx1P18111 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx1P18111 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx1P18111 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Cdx1P18111 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx1P18111 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx1P18111 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx1P18111 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx1P18111 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Cdx1P18111 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx1P18111 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Cdx1P18111 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Cdx1P18111 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC12.29□□□□□ -0.44
Cdx1P18111 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx1P18111 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC12.29□□□□□ -0.44
Cdx1P18111 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx1P18111 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx1P18111 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx1P18111 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx1P18111 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx1P18111 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx1P18111 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx1P18111 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx1P18111 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC12.28□□□□□ -0.44
Cdx1P18111 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC12.28□□□□□ -0.44
Cdx1P18111 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx1P18111 Fbxl12-205ENSMUST00000140702 1555 ntBASIC12.28□□□□□ -0.44
Cdx1P18111 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx1P18111 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC12.28□□□□□ -0.44
Cdx1P18111 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC12.28□□□□□ -0.44
Cdx1P18111 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx1P18111 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
Cdx1P18111 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx1P18111 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Cdx1P18111 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Cdx1P18111 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx1P18111 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx1P18111 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx1P18111 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx1P18111 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx1P18111 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx1P18111 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx1P18111 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx1P18111 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx1P18111 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx1P18111 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx1P18111 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx1P18111 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Cdx1P18111 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Cdx1P18111 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Cdx1P18111 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC12.27□□□□□ -0.44
Cdx1P18111 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Cdx1P18111 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Cdx1P18111 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Cdx1P18111 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
Cdx1P18111 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Cdx1P18111 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC12.27□□□□□ -0.44
Cdx1P18111 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Cdx1P18111 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx1P18111 Nupl1-207ENSMUST00000225311 2475 ntBASIC12.27□□□□□ -0.45
Cdx1P18111 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC12.27□□□□□ -0.45
Cdx1P18111 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx1P18111 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx1P18111 Gm7153-201ENSMUST00000117092 455 ntBASIC12.27□□□□□ -0.45
Cdx1P18111 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx1P18111 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx1P18111 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC12.27□□□□□ -0.45
Cdx1P18111 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx1P18111 AC122351.1-201ENSMUST00000220467 126 ntBASIC12.27□□□□□ -0.45
Cdx1P18111 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx1P18111 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx1P18111 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx1P18111 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Cdx1P18111 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx1P18111 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx1P18111 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx1P18111 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx1P18111 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx1P18111 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC12.27□□□□□ -0.45
Cdx1P18111 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx1P18111 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Cdx1P18111 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Cdx1P18111 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx1P18111 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Cdx1P18111 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx1P18111 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx1P18111 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx1P18111 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC12.27□□□□□ -0.45
Cdx1P18111 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx1P18111 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Cdx1P18111 Actl10-202ENSMUST00000226583 1501 ntBASIC12.27□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 58.9 ms