Protein–RNA interactions for Protein: Q9DCB1

Hmgn3, High mobility group nucleosome-binding domain-containing protein 3, mousemouse

Predictions only

Length 99 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgn3Q9DCB1 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Hmgn3Q9DCB1 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC21.22■□□□□ 0.99
Hmgn3Q9DCB1 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Hmgn3Q9DCB1 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Hmgn3Q9DCB1 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Hmgn3Q9DCB1 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Hmgn3Q9DCB1 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Hmgn3Q9DCB1 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC21.21■□□□□ 0.99
Hmgn3Q9DCB1 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
Hmgn3Q9DCB1 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Hmgn3Q9DCB1 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Hmgn3Q9DCB1 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Hmgn3Q9DCB1 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Hmgn3Q9DCB1 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Hmgn3Q9DCB1 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Hmgn3Q9DCB1 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Hmgn3Q9DCB1 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Hmgn3Q9DCB1 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Hmgn3Q9DCB1 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Hmgn3Q9DCB1 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Hmgn3Q9DCB1 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Hmgn3Q9DCB1 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Hmgn3Q9DCB1 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Hmgn3Q9DCB1 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Hmgn3Q9DCB1 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Hmgn3Q9DCB1 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Hmgn3Q9DCB1 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Hmgn3Q9DCB1 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Hmgn3Q9DCB1 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Hmgn3Q9DCB1 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Hmgn3Q9DCB1 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Hmgn3Q9DCB1 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Hmgn3Q9DCB1 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Hmgn3Q9DCB1 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Hmgn3Q9DCB1 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Hmgn3Q9DCB1 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Hmgn3Q9DCB1 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Hmgn3Q9DCB1 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Hmgn3Q9DCB1 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Hmgn3Q9DCB1 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Hmgn3Q9DCB1 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Hmgn3Q9DCB1 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
Hmgn3Q9DCB1 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
Hmgn3Q9DCB1 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Hmgn3Q9DCB1 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC21.13■□□□□ 0.97
Hmgn3Q9DCB1 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Hmgn3Q9DCB1 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Hmgn3Q9DCB1 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Hmgn3Q9DCB1 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Hmgn3Q9DCB1 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC21.13■□□□□ 0.97
Hmgn3Q9DCB1 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Hmgn3Q9DCB1 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Hmgn3Q9DCB1 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Hmgn3Q9DCB1 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC21.12■□□□□ 0.97
Hmgn3Q9DCB1 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC21.12■□□□□ 0.97
Hmgn3Q9DCB1 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Hmgn3Q9DCB1 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Hmgn3Q9DCB1 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Hmgn3Q9DCB1 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Hmgn3Q9DCB1 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Hmgn3Q9DCB1 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Hmgn3Q9DCB1 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC21.1■□□□□ 0.97
Hmgn3Q9DCB1 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Hmgn3Q9DCB1 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Hmgn3Q9DCB1 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC21.1■□□□□ 0.97
Hmgn3Q9DCB1 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Hmgn3Q9DCB1 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Hmgn3Q9DCB1 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Hmgn3Q9DCB1 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Hmgn3Q9DCB1 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Hmgn3Q9DCB1 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Hmgn3Q9DCB1 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Hmgn3Q9DCB1 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Hmgn3Q9DCB1 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Hmgn3Q9DCB1 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Hmgn3Q9DCB1 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Hmgn3Q9DCB1 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgn3Q9DCB1 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgn3Q9DCB1 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgn3Q9DCB1 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgn3Q9DCB1 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgn3Q9DCB1 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgn3Q9DCB1 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Hmgn3Q9DCB1 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Hmgn3Q9DCB1 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Hmgn3Q9DCB1 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Hmgn3Q9DCB1 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Hmgn3Q9DCB1 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Hmgn3Q9DCB1 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Hmgn3Q9DCB1 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Hmgn3Q9DCB1 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Hmgn3Q9DCB1 Gm14121-201ENSMUST00000121441 1380 ntBASIC21.03■□□□□ 0.96
Hmgn3Q9DCB1 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC21.03■□□□□ 0.96
Hmgn3Q9DCB1 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Hmgn3Q9DCB1 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Hmgn3Q9DCB1 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Hmgn3Q9DCB1 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Hmgn3Q9DCB1 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Hmgn3Q9DCB1 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
Hmgn3Q9DCB1 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms