Protein–RNA interactions for Protein: Q8R5L3

Vps39, Vam6/Vps39-like protein, mousemouse

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps39Q8R5L3 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Vps39Q8R5L3 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Vps39Q8R5L3 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
Vps39Q8R5L3 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Vps39Q8R5L3 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
Vps39Q8R5L3 Gm13889-201ENSMUST00000099689 1386 ntBASIC22.46■■□□□ 1.19
Vps39Q8R5L3 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Vps39Q8R5L3 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC22.45■■□□□ 1.19
Vps39Q8R5L3 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
Vps39Q8R5L3 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Vps39Q8R5L3 Gm7432-201ENSMUST00000210343 879 ntBASIC22.45■■□□□ 1.18
Vps39Q8R5L3 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC22.45■■□□□ 1.18
Vps39Q8R5L3 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Vps39Q8R5L3 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC22.44■■□□□ 1.18
Vps39Q8R5L3 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
Vps39Q8R5L3 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Vps39Q8R5L3 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Vps39Q8R5L3 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
Vps39Q8R5L3 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Vps39Q8R5L3 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC22.43■■□□□ 1.18
Vps39Q8R5L3 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Vps39Q8R5L3 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC22.42■■□□□ 1.18
Vps39Q8R5L3 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC22.42■■□□□ 1.18
Vps39Q8R5L3 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
Vps39Q8R5L3 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC22.42■■□□□ 1.18
Vps39Q8R5L3 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC22.41■■□□□ 1.18
Vps39Q8R5L3 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Vps39Q8R5L3 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Vps39Q8R5L3 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Vps39Q8R5L3 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
Vps39Q8R5L3 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Vps39Q8R5L3 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Vps39Q8R5L3 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Vps39Q8R5L3 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.18
Vps39Q8R5L3 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Vps39Q8R5L3 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Vps39Q8R5L3 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC22.39■■□□□ 1.17
Vps39Q8R5L3 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Vps39Q8R5L3 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Vps39Q8R5L3 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
Vps39Q8R5L3 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
Vps39Q8R5L3 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Vps39Q8R5L3 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Vps39Q8R5L3 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
Vps39Q8R5L3 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Vps39Q8R5L3 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Vps39Q8R5L3 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
Vps39Q8R5L3 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC22.35■■□□□ 1.17
Vps39Q8R5L3 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Vps39Q8R5L3 Gm11599-201ENSMUST00000118720 878 ntBASIC22.35■■□□□ 1.17
Vps39Q8R5L3 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Vps39Q8R5L3 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Vps39Q8R5L3 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Vps39Q8R5L3 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Vps39Q8R5L3 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Vps39Q8R5L3 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
Vps39Q8R5L3 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC22.33■■□□□ 1.17
Vps39Q8R5L3 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC22.33■■□□□ 1.17
Vps39Q8R5L3 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
Vps39Q8R5L3 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Vps39Q8R5L3 Gm9812-201ENSMUST00000061934 968 ntBASIC22.33■■□□□ 1.17
Vps39Q8R5L3 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
Vps39Q8R5L3 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Vps39Q8R5L3 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Vps39Q8R5L3 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC22.32■■□□□ 1.16
Vps39Q8R5L3 Mir3960-201ENSMUST00000198213 73 ntBASIC22.32■■□□□ 1.16
Vps39Q8R5L3 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC22.32■■□□□ 1.16
Vps39Q8R5L3 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Vps39Q8R5L3 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
Vps39Q8R5L3 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Vps39Q8R5L3 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
Vps39Q8R5L3 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC22.31■■□□□ 1.16
Vps39Q8R5L3 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
Vps39Q8R5L3 AC154454.1-201ENSMUST00000225253 216 ntBASIC22.31■■□□□ 1.16
Vps39Q8R5L3 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Vps39Q8R5L3 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Vps39Q8R5L3 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Vps39Q8R5L3 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Vps39Q8R5L3 AC153911.1-201ENSMUST00000220378 758 ntBASIC22.3■■□□□ 1.16
Vps39Q8R5L3 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Vps39Q8R5L3 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Vps39Q8R5L3 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Vps39Q8R5L3 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Vps39Q8R5L3 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC22.29■■□□□ 1.16
Vps39Q8R5L3 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC22.29■■□□□ 1.16
Vps39Q8R5L3 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Vps39Q8R5L3 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Vps39Q8R5L3 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Vps39Q8R5L3 Gm12818-201ENSMUST00000117562 1349 ntBASIC22.28■■□□□ 1.16
Vps39Q8R5L3 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
Vps39Q8R5L3 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Vps39Q8R5L3 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Vps39Q8R5L3 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Vps39Q8R5L3 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Vps39Q8R5L3 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
Vps39Q8R5L3 H3f3aos-201ENSMUST00000097448 2905 ntBASIC22.27■■□□□ 1.15
Vps39Q8R5L3 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Vps39Q8R5L3 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Vps39Q8R5L3 AC122317.2-201ENSMUST00000218708 1248 ntBASIC22.26■■□□□ 1.15
Vps39Q8R5L3 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms