Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Usf1Q61069 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usf1Q61069 Gm9959-201ENSMUST00000068277 390 ntBASIC20.81■□□□□ 0.92
Usf1Q61069 AC153504.1-201ENSMUST00000218379 2290 ntBASIC20.81■□□□□ 0.92
Usf1Q61069 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usf1Q61069 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usf1Q61069 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usf1Q61069 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC20.8■□□□□ 0.92
Usf1Q61069 Gm18755-201ENSMUST00000218030 1099 ntBASIC20.8■□□□□ 0.92
Usf1Q61069 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usf1Q61069 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usf1Q61069 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC20.79■□□□□ 0.92
Usf1Q61069 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Usf1Q61069 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
Usf1Q61069 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Usf1Q61069 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usf1Q61069 Gm43445-201ENSMUST00000198564 2091 ntBASIC20.78■□□□□ 0.92
Usf1Q61069 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usf1Q61069 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Usf1Q61069 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC20.77■□□□□ 0.92
Usf1Q61069 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usf1Q61069 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usf1Q61069 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usf1Q61069 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usf1Q61069 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC20.76■□□□□ 0.91
Usf1Q61069 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Usf1Q61069 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC20.76■□□□□ 0.91
Usf1Q61069 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usf1Q61069 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usf1Q61069 Gm4419-202ENSMUST00000226239 1431 ntBASIC20.76■□□□□ 0.91
Usf1Q61069 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usf1Q61069 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC20.74■□□□□ 0.91
Usf1Q61069 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC20.74■□□□□ 0.91
Usf1Q61069 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usf1Q61069 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usf1Q61069 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usf1Q61069 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usf1Q61069 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usf1Q61069 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Usf1Q61069 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usf1Q61069 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usf1Q61069 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Usf1Q61069 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC20.73■□□□□ 0.91
Usf1Q61069 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Usf1Q61069 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usf1Q61069 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC20.72■□□□□ 0.91
Usf1Q61069 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC20.72■□□□□ 0.91
Usf1Q61069 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usf1Q61069 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usf1Q61069 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC20.72■□□□□ 0.91
Usf1Q61069 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usf1Q61069 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Usf1Q61069 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
Usf1Q61069 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usf1Q61069 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC20.7■□□□□ 0.9
Usf1Q61069 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
Usf1Q61069 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC20.7■□□□□ 0.9
Usf1Q61069 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Usf1Q61069 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Usf1Q61069 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usf1Q61069 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC20.68■□□□□ 0.9
Usf1Q61069 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usf1Q61069 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Usf1Q61069 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usf1Q61069 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usf1Q61069 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC20.67■□□□□ 0.9
Usf1Q61069 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Usf1Q61069 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
Usf1Q61069 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Usf1Q61069 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Usf1Q61069 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC20.65■□□□□ 0.9
Usf1Q61069 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usf1Q61069 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Usf1Q61069 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC20.65■□□□□ 0.9
Usf1Q61069 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC20.65■□□□□ 0.9
Usf1Q61069 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Usf1Q61069 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.64■□□□□ 0.89
Usf1Q61069 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
Usf1Q61069 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Usf1Q61069 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usf1Q61069 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usf1Q61069 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usf1Q61069 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usf1Q61069 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usf1Q61069 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Usf1Q61069 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usf1Q61069 Etf1-202ENSMUST00000180351 108 ntBASIC20.62■□□□□ 0.89
Usf1Q61069 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usf1Q61069 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usf1Q61069 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC20.61■□□□□ 0.89
Usf1Q61069 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Usf1Q61069 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Usf1Q61069 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usf1Q61069 Gm10232-201ENSMUST00000089221 720 ntBASIC20.61■□□□□ 0.89
Usf1Q61069 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC20.61■□□□□ 0.89
Usf1Q61069 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usf1Q61069 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usf1Q61069 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Usf1Q61069 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usf1Q61069 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms