Protein–RNA interactions for Protein: Q5R1I1

Trav7d-3, T cell receptor alpha variable 7-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav7d-3Q5R1I1 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav7d-3Q5R1I1 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC16.41■□□□□ 0.22
Trav7d-3Q5R1I1 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav7d-3Q5R1I1 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trav7d-3Q5R1I1 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav7d-3Q5R1I1 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Trav7d-3Q5R1I1 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav7d-3Q5R1I1 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC16.4■□□□□ 0.22
Trav7d-3Q5R1I1 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trav7d-3Q5R1I1 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Trav7d-3Q5R1I1 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC16.39■□□□□ 0.21
Trav7d-3Q5R1I1 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Trav7d-3Q5R1I1 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trav7d-3Q5R1I1 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav7d-3Q5R1I1 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav7d-3Q5R1I1 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Trav7d-3Q5R1I1 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav7d-3Q5R1I1 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trav7d-3Q5R1I1 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trav7d-3Q5R1I1 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav7d-3Q5R1I1 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav7d-3Q5R1I1 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav7d-3Q5R1I1 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav7d-3Q5R1I1 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav7d-3Q5R1I1 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trav7d-3Q5R1I1 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trav7d-3Q5R1I1 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trav7d-3Q5R1I1 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trav7d-3Q5R1I1 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trav7d-3Q5R1I1 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trav7d-3Q5R1I1 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trav7d-3Q5R1I1 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trav7d-3Q5R1I1 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Trav7d-3Q5R1I1 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trav7d-3Q5R1I1 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trav7d-3Q5R1I1 Gm8503-201ENSMUST00000118131 455 ntBASIC16.36■□□□□ 0.21
Trav7d-3Q5R1I1 AC131739.1-201ENSMUST00000221692 1245 ntBASIC16.36■□□□□ 0.21
Trav7d-3Q5R1I1 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trav7d-3Q5R1I1 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trav7d-3Q5R1I1 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC16.35■□□□□ 0.21
Trav7d-3Q5R1I1 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Trav7d-3Q5R1I1 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trav7d-3Q5R1I1 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trav7d-3Q5R1I1 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Trav7d-3Q5R1I1 Gm17641-201ENSMUST00000166328 2350 ntBASIC16.35■□□□□ 0.21
Trav7d-3Q5R1I1 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trav7d-3Q5R1I1 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trav7d-3Q5R1I1 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trav7d-3Q5R1I1 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trav7d-3Q5R1I1 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav7d-3Q5R1I1 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Trav7d-3Q5R1I1 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav7d-3Q5R1I1 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav7d-3Q5R1I1 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav7d-3Q5R1I1 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC16.34■□□□□ 0.21
Trav7d-3Q5R1I1 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav7d-3Q5R1I1 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC16.33■□□□□ 0.21
Trav7d-3Q5R1I1 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC16.33■□□□□ 0.2
Trav7d-3Q5R1I1 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC16.32■□□□□ 0.2
Trav7d-3Q5R1I1 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC16.32■□□□□ 0.2
Trav7d-3Q5R1I1 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Trav7d-3Q5R1I1 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav7d-3Q5R1I1 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav7d-3Q5R1I1 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav7d-3Q5R1I1 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav7d-3Q5R1I1 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav7d-3Q5R1I1 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Trav7d-3Q5R1I1 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
Trav7d-3Q5R1I1 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Trav7d-3Q5R1I1 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav7d-3Q5R1I1 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav7d-3Q5R1I1 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Trav7d-3Q5R1I1 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav7d-3Q5R1I1 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav7d-3Q5R1I1 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trav7d-3Q5R1I1 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav7d-3Q5R1I1 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Trav7d-3Q5R1I1 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav7d-3Q5R1I1 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Trav7d-3Q5R1I1 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC16.29■□□□□ 0.2
Trav7d-3Q5R1I1 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC16.29■□□□□ 0.2
Trav7d-3Q5R1I1 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC16.29■□□□□ 0.2
Trav7d-3Q5R1I1 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav7d-3Q5R1I1 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav7d-3Q5R1I1 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trav7d-3Q5R1I1 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trav7d-3Q5R1I1 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC16.28■□□□□ 0.2
Trav7d-3Q5R1I1 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trav7d-3Q5R1I1 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC16.28■□□□□ 0.2
Trav7d-3Q5R1I1 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Trav7d-3Q5R1I1 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Trav7d-3Q5R1I1 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trav7d-3Q5R1I1 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trav7d-3Q5R1I1 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trav7d-3Q5R1I1 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trav7d-3Q5R1I1 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trav7d-3Q5R1I1 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trav7d-3Q5R1I1 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trav7d-3Q5R1I1 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trav7d-3Q5R1I1 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 12.4 ms