Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC26.45■■□□□ 1.82
Limch1Q3UH68 Gm11687-201ENSMUST00000118911 886 ntBASIC26.44■■□□□ 1.82
Limch1Q3UH68 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Limch1Q3UH68 Gm4799-201ENSMUST00000095396 657 ntBASIC26.44■■□□□ 1.82
Limch1Q3UH68 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
Limch1Q3UH68 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
Limch1Q3UH68 AC154454.1-201ENSMUST00000225253 216 ntBASIC26.43■■□□□ 1.82
Limch1Q3UH68 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
Limch1Q3UH68 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Limch1Q3UH68 Pkd1-207ENSMUST00000228550 1050 ntBASIC26.42■■□□□ 1.82
Limch1Q3UH68 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Limch1Q3UH68 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
Limch1Q3UH68 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC26.41■■□□□ 1.82
Limch1Q3UH68 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC26.41■■□□□ 1.82
Limch1Q3UH68 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC26.41■■□□□ 1.82
Limch1Q3UH68 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
Limch1Q3UH68 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC26.4■■□□□ 1.82
Limch1Q3UH68 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Limch1Q3UH68 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
Limch1Q3UH68 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
Limch1Q3UH68 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
Limch1Q3UH68 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Limch1Q3UH68 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC26.39■■□□□ 1.82
Limch1Q3UH68 Mir3960-201ENSMUST00000198213 73 ntBASIC26.39■■□□□ 1.82
Limch1Q3UH68 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
Limch1Q3UH68 Gm16437-201ENSMUST00000025669 507 ntBASIC26.38■■□□□ 1.81
Limch1Q3UH68 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
Limch1Q3UH68 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC26.37■■□□□ 1.81
Limch1Q3UH68 Gm12366-201ENSMUST00000121722 873 ntBASIC26.37■■□□□ 1.81
Limch1Q3UH68 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC26.37■■□□□ 1.81
Limch1Q3UH68 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC26.37■■□□□ 1.81
Limch1Q3UH68 Gm5786-201ENSMUST00000085368 882 ntBASIC26.37■■□□□ 1.81
Limch1Q3UH68 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.81
Limch1Q3UH68 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Limch1Q3UH68 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC26.35■■□□□ 1.81
Limch1Q3UH68 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Limch1Q3UH68 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Limch1Q3UH68 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Limch1Q3UH68 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Limch1Q3UH68 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Limch1Q3UH68 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Limch1Q3UH68 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Limch1Q3UH68 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
Limch1Q3UH68 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC26.34■■□□□ 1.81
Limch1Q3UH68 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Limch1Q3UH68 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Limch1Q3UH68 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Limch1Q3UH68 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC26.34■■□□□ 1.81
Limch1Q3UH68 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Limch1Q3UH68 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Limch1Q3UH68 Gm45364-201ENSMUST00000210883 159 ntBASIC26.33■■□□□ 1.81
Limch1Q3UH68 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Limch1Q3UH68 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC26.33■■□□□ 1.8
Limch1Q3UH68 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
Limch1Q3UH68 Gm13889-201ENSMUST00000099689 1386 ntBASIC26.33■■□□□ 1.8
Limch1Q3UH68 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
Limch1Q3UH68 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC26.32■■□□□ 1.8
Limch1Q3UH68 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC26.32■■□□□ 1.8
Limch1Q3UH68 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Limch1Q3UH68 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Limch1Q3UH68 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Limch1Q3UH68 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Limch1Q3UH68 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
Limch1Q3UH68 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Limch1Q3UH68 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Limch1Q3UH68 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
Limch1Q3UH68 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Limch1Q3UH68 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC26.3■■□□□ 1.8
Limch1Q3UH68 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
Limch1Q3UH68 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Limch1Q3UH68 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
Limch1Q3UH68 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC26.29■■□□□ 1.8
Limch1Q3UH68 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Limch1Q3UH68 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Limch1Q3UH68 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Limch1Q3UH68 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Limch1Q3UH68 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Limch1Q3UH68 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Limch1Q3UH68 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
Limch1Q3UH68 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Limch1Q3UH68 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC26.26■■□□□ 1.79
Limch1Q3UH68 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Limch1Q3UH68 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Limch1Q3UH68 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC26.25■■□□□ 1.79
Limch1Q3UH68 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
Limch1Q3UH68 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Limch1Q3UH68 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Limch1Q3UH68 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
Limch1Q3UH68 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Limch1Q3UH68 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC26.23■■□□□ 1.79
Limch1Q3UH68 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Limch1Q3UH68 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Limch1Q3UH68 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
Limch1Q3UH68 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
Limch1Q3UH68 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Limch1Q3UH68 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Limch1Q3UH68 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Limch1Q3UH68 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
Limch1Q3UH68 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Limch1Q3UH68 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Retrieved 100 of 76,532 protein–RNA pairs in 817.2 ms