Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 AC151971.4-201ENSMUST00000214717 704 ntBASIC21.39■■□□□ 1.01
Sox3P53784 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Sox3P53784 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Sox3P53784 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Sox3P53784 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Sox3P53784 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC21.37■■□□□ 1.01
Sox3P53784 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
Sox3P53784 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Sox3P53784 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Sox3P53784 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Sox3P53784 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Sox3P53784 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Sox3P53784 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Sox3P53784 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Sox3P53784 AC093043.1-201ENSMUST00000226700 898 ntBASIC21.35■■□□□ 1.01
Sox3P53784 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Sox3P53784 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Sox3P53784 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
Sox3P53784 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Sox3P53784 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
Sox3P53784 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC21.34■■□□□ 1.01
Sox3P53784 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Sox3P53784 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Sox3P53784 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Sox3P53784 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Sox3P53784 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Sox3P53784 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Sox3P53784 Gm9910-201ENSMUST00000195385 1550 ntBASIC21.33■■□□□ 1.01
Sox3P53784 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Sox3P53784 Gm37136-201ENSMUST00000194368 194 ntBASIC21.33■■□□□ 1.01
Sox3P53784 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Sox3P53784 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC21.32■■□□□ 1
Sox3P53784 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Sox3P53784 Il17rd-202ENSMUST00000223942 2186 ntBASIC21.31■■□□□ 1
Sox3P53784 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Sox3P53784 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Sox3P53784 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Sox3P53784 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Sox3P53784 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Sox3P53784 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC21.3■■□□□ 1
Sox3P53784 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC21.29■■□□□ 1
Sox3P53784 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC21.29■■□□□ 1
Sox3P53784 Rps24-207ENSMUST00000224568 714 ntBASIC21.29■■□□□ 1
Sox3P53784 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
Sox3P53784 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC21.29■■□□□ 1
Sox3P53784 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Sox3P53784 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC21.28■■□□□ 1
Sox3P53784 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC21.28■■□□□ 1
Sox3P53784 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC21.28■■□□□ 1
Sox3P53784 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC21.28■■□□□ 1
Sox3P53784 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC21.28■■□□□ 1
Sox3P53784 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Sox3P53784 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
Sox3P53784 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Sox3P53784 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC21.27■■□□□ 1
Sox3P53784 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Sox3P53784 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sox3P53784 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sox3P53784 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sox3P53784 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sox3P53784 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC21.26■□□□□ 0.99
Sox3P53784 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC21.26■□□□□ 0.99
Sox3P53784 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sox3P53784 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Sox3P53784 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Sox3P53784 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Sox3P53784 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Sox3P53784 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Sox3P53784 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Sox3P53784 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sox3P53784 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sox3P53784 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Sox3P53784 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sox3P53784 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Sox3P53784 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
Sox3P53784 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sox3P53784 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sox3P53784 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Sox3P53784 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
Sox3P53784 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sox3P53784 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC21.21■□□□□ 0.99
Sox3P53784 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC21.21■□□□□ 0.99
Sox3P53784 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC21.21■□□□□ 0.99
Sox3P53784 Gm45102-201ENSMUST00000207427 857 ntBASIC21.21■□□□□ 0.99
Sox3P53784 Gm9812-201ENSMUST00000061934 968 ntBASIC21.21■□□□□ 0.99
Sox3P53784 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Sox3P53784 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
Sox3P53784 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Sox3P53784 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC21.2■□□□□ 0.98
Sox3P53784 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Sox3P53784 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC21.2■□□□□ 0.98
Sox3P53784 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Sox3P53784 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Sox3P53784 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Sox3P53784 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Sox3P53784 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC21.19■□□□□ 0.98
Sox3P53784 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Sox3P53784 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Sox3P53784 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Sox3P53784 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms