Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Rfx3P48381 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Rfx3P48381 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Rfx3P48381 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rfx3P48381 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Rfx3P48381 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rfx3P48381 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rfx3P48381 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rfx3P48381 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rfx3P48381 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rfx3P48381 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rfx3P48381 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rfx3P48381 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rfx3P48381 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rfx3P48381 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Rfx3P48381 AC131739.1-201ENSMUST00000221692 1245 ntBASIC20.19■□□□□ 0.82
Rfx3P48381 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC20.19■□□□□ 0.82
Rfx3P48381 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rfx3P48381 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rfx3P48381 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC20.18■□□□□ 0.82
Rfx3P48381 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Rfx3P48381 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rfx3P48381 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Rfx3P48381 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Rfx3P48381 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Rfx3P48381 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC20.17■□□□□ 0.82
Rfx3P48381 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Rfx3P48381 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Rfx3P48381 Gm4419-202ENSMUST00000226239 1431 ntBASIC20.17■□□□□ 0.82
Rfx3P48381 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Rfx3P48381 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Rfx3P48381 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Rfx3P48381 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC20.16■□□□□ 0.82
Rfx3P48381 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC20.16■□□□□ 0.82
Rfx3P48381 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rfx3P48381 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Rfx3P48381 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Rfx3P48381 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rfx3P48381 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Rfx3P48381 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rfx3P48381 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Rfx3P48381 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC20.15■□□□□ 0.82
Rfx3P48381 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.82
Rfx3P48381 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
Rfx3P48381 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Rfx3P48381 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Rfx3P48381 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Rfx3P48381 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Rfx3P48381 Gm42699-201ENSMUST00000198104 1657 ntBASIC20.13■□□□□ 0.81
Rfx3P48381 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Rfx3P48381 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Rfx3P48381 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Rfx3P48381 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Rfx3P48381 H3f3aos-201ENSMUST00000097448 2905 ntBASIC20.13■□□□□ 0.81
Rfx3P48381 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Rfx3P48381 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Rfx3P48381 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Rfx3P48381 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Rfx3P48381 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Rfx3P48381 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Rfx3P48381 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC20.11■□□□□ 0.81
Rfx3P48381 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Rfx3P48381 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Rfx3P48381 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Rfx3P48381 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Rfx3P48381 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Rfx3P48381 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Rfx3P48381 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
Rfx3P48381 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rfx3P48381 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rfx3P48381 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC20.09■□□□□ 0.81
Rfx3P48381 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Rfx3P48381 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Rfx3P48381 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Rfx3P48381 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Rfx3P48381 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Rfx3P48381 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Rfx3P48381 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Rfx3P48381 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
Rfx3P48381 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Rfx3P48381 Gm7432-201ENSMUST00000210343 879 ntBASIC20.07■□□□□ 0.8
Rfx3P48381 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Rfx3P48381 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Rfx3P48381 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rfx3P48381 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC20.06■□□□□ 0.8
Rfx3P48381 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rfx3P48381 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rfx3P48381 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rfx3P48381 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rfx3P48381 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rfx3P48381 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rfx3P48381 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rfx3P48381 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Rfx3P48381 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Rfx3P48381 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Rfx3P48381 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC20.04■□□□□ 0.8
Rfx3P48381 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Rfx3P48381 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Rfx3P48381 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Rfx3P48381 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 11.3 ms