Protein–RNA interactions for Protein: P29595

Nedd8, NEDD8, mousemouse

Predictions only

Length 81 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nedd8P29595 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Nedd8P29595 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
Nedd8P29595 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Nedd8P29595 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Nedd8P29595 Gm6934-201ENSMUST00000194780 1905 ntBASIC20.88■□□□□ 0.93
Nedd8P29595 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Nedd8P29595 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Nedd8P29595 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Nedd8P29595 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Nedd8P29595 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Nedd8P29595 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Nedd8P29595 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Nedd8P29595 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Nedd8P29595 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nedd8P29595 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nedd8P29595 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nedd8P29595 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nedd8P29595 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nedd8P29595 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nedd8P29595 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Nedd8P29595 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Nedd8P29595 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Nedd8P29595 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nedd8P29595 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nedd8P29595 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Nedd8P29595 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Nedd8P29595 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Nedd8P29595 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Nedd8P29595 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Nedd8P29595 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
Nedd8P29595 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Nedd8P29595 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Nedd8P29595 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.93
Nedd8P29595 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Nedd8P29595 Particl-201ENSMUST00000205370 1560 ntBASIC20.83■□□□□ 0.92
Nedd8P29595 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
Nedd8P29595 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Nedd8P29595 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Nedd8P29595 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Nedd8P29595 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC20.82■□□□□ 0.92
Nedd8P29595 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Nedd8P29595 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nedd8P29595 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC20.81■□□□□ 0.92
Nedd8P29595 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nedd8P29595 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC20.81■□□□□ 0.92
Nedd8P29595 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Nedd8P29595 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nedd8P29595 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Nedd8P29595 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nedd8P29595 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC20.8■□□□□ 0.92
Nedd8P29595 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Nedd8P29595 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Nedd8P29595 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Nedd8P29595 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Nedd8P29595 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Nedd8P29595 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Nedd8P29595 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Nedd8P29595 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Nedd8P29595 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Nedd8P29595 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Nedd8P29595 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Nedd8P29595 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
Nedd8P29595 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Nedd8P29595 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Nedd8P29595 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Nedd8P29595 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Nedd8P29595 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Nedd8P29595 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Nedd8P29595 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC20.77■□□□□ 0.92
Nedd8P29595 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Nedd8P29595 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Nedd8P29595 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Nedd8P29595 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Nedd8P29595 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Nedd8P29595 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Nedd8P29595 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Nedd8P29595 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC20.76■□□□□ 0.91
Nedd8P29595 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC20.76■□□□□ 0.91
Nedd8P29595 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Nedd8P29595 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Nedd8P29595 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Nedd8P29595 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Nedd8P29595 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC20.75■□□□□ 0.91
Nedd8P29595 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Nedd8P29595 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC20.74■□□□□ 0.91
Nedd8P29595 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Nedd8P29595 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Nedd8P29595 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Nedd8P29595 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Nedd8P29595 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Nedd8P29595 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Nedd8P29595 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Nedd8P29595 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Nedd8P29595 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC20.72■□□□□ 0.91
Nedd8P29595 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Nedd8P29595 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Nedd8P29595 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Nedd8P29595 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
Nedd8P29595 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Nedd8P29595 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 62.3 ms