Protein–RNA interactions for Protein: O35188

Cx3cl1, Fractalkine, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cx3cl1O35188 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Cx3cl1O35188 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cx3cl1O35188 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Cx3cl1O35188 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cx3cl1O35188 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cx3cl1O35188 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Cx3cl1O35188 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Cx3cl1O35188 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
Cx3cl1O35188 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
Cx3cl1O35188 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cx3cl1O35188 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC21.01■□□□□ 0.95
Cx3cl1O35188 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cx3cl1O35188 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cx3cl1O35188 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC21■□□□□ 0.95
Cx3cl1O35188 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cx3cl1O35188 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cx3cl1O35188 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Cx3cl1O35188 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC21■□□□□ 0.95
Cx3cl1O35188 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cx3cl1O35188 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC21■□□□□ 0.95
Cx3cl1O35188 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cx3cl1O35188 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC20.99■□□□□ 0.95
Cx3cl1O35188 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC20.98■□□□□ 0.95
Cx3cl1O35188 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Cx3cl1O35188 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cx3cl1O35188 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cx3cl1O35188 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Cx3cl1O35188 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cx3cl1O35188 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cx3cl1O35188 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cx3cl1O35188 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cx3cl1O35188 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC20.97■□□□□ 0.95
Cx3cl1O35188 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cx3cl1O35188 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cx3cl1O35188 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Cx3cl1O35188 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cx3cl1O35188 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cx3cl1O35188 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cx3cl1O35188 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC20.95■□□□□ 0.94
Cx3cl1O35188 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cx3cl1O35188 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cx3cl1O35188 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cx3cl1O35188 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cx3cl1O35188 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Cx3cl1O35188 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC20.94■□□□□ 0.94
Cx3cl1O35188 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cx3cl1O35188 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
Cx3cl1O35188 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cx3cl1O35188 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cx3cl1O35188 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC20.93■□□□□ 0.94
Cx3cl1O35188 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cx3cl1O35188 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cx3cl1O35188 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cx3cl1O35188 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cx3cl1O35188 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cx3cl1O35188 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC20.91■□□□□ 0.94
Cx3cl1O35188 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cx3cl1O35188 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cx3cl1O35188 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cx3cl1O35188 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC20.9■□□□□ 0.94
Cx3cl1O35188 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC20.9■□□□□ 0.94
Cx3cl1O35188 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Cx3cl1O35188 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC20.9■□□□□ 0.94
Cx3cl1O35188 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC20.89■□□□□ 0.94
Cx3cl1O35188 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Cx3cl1O35188 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
Cx3cl1O35188 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC20.89■□□□□ 0.93
Cx3cl1O35188 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cx3cl1O35188 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cx3cl1O35188 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cx3cl1O35188 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cx3cl1O35188 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cx3cl1O35188 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cx3cl1O35188 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cx3cl1O35188 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Cx3cl1O35188 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cx3cl1O35188 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cx3cl1O35188 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cx3cl1O35188 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Cx3cl1O35188 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cx3cl1O35188 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC20.85■□□□□ 0.93
Cx3cl1O35188 Gm44428-201ENSMUST00000204474 874 ntBASIC20.85■□□□□ 0.93
Cx3cl1O35188 AC151971.4-201ENSMUST00000214717 704 ntBASIC20.85■□□□□ 0.93
Cx3cl1O35188 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC20.85■□□□□ 0.93
Cx3cl1O35188 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cx3cl1O35188 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cx3cl1O35188 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cx3cl1O35188 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Cx3cl1O35188 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC20.84■□□□□ 0.93
Cx3cl1O35188 Gm27502-201ENSMUST00000183495 199 ntBASIC20.84■□□□□ 0.93
Cx3cl1O35188 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC20.84■□□□□ 0.93
Cx3cl1O35188 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cx3cl1O35188 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cx3cl1O35188 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cx3cl1O35188 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cx3cl1O35188 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cx3cl1O35188 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cx3cl1O35188 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cx3cl1O35188 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
Cx3cl1O35188 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 83.1 ms