Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Olfr129-201ENSMUST00000122318 993 ntBASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Gm11960-202ENSMUST00000181063 2858 ntBASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 AC154471.1-201ENSMUST00000224418 436 ntBASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Ddx28Q9CWT6 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ddx28Q9CWT6 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ddx28Q9CWT6 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ddx28Q9CWT6 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ddx28Q9CWT6 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ddx28Q9CWT6 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ddx28Q9CWT6 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ddx28Q9CWT6 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ddx28Q9CWT6 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ddx28Q9CWT6 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC14.27□□□□□ -0.13
Ddx28Q9CWT6 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ddx28Q9CWT6 AC153794.1-201ENSMUST00000169148 126 ntBASIC14.27□□□□□ -0.13
Ddx28Q9CWT6 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ddx28Q9CWT6 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ddx28Q9CWT6 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC14.27□□□□□ -0.13
Ddx28Q9CWT6 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ddx28Q9CWT6 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ddx28Q9CWT6 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ddx28Q9CWT6 Gm10819-201ENSMUST00000099988 561 ntBASIC14.27□□□□□ -0.13
Ddx28Q9CWT6 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC14.27□□□□□ -0.13
Ddx28Q9CWT6 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ddx28Q9CWT6 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
Ddx28Q9CWT6 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ddx28Q9CWT6 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
Ddx28Q9CWT6 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ddx28Q9CWT6 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ddx28Q9CWT6 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ddx28Q9CWT6 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC14.27□□□□□ -0.13
Ddx28Q9CWT6 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Sorbs3-204ENSMUST00000227929 2460 ntBASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Gm1818-201ENSMUST00000169406 1184 ntBASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Gm10459-201ENSMUST00000202708 1155 ntBASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Ddx28Q9CWT6 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 73.8 ms