Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim56Q80VI1 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim56Q80VI1 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim56Q80VI1 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Trim56Q80VI1 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Trim56Q80VI1 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim56Q80VI1 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim56Q80VI1 Gm9385-201ENSMUST00000117563 472 ntBASIC17.92■□□□□ 0.46
Trim56Q80VI1 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Trim56Q80VI1 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC17.92■□□□□ 0.46
Trim56Q80VI1 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim56Q80VI1 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC17.92■□□□□ 0.46
Trim56Q80VI1 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Trim56Q80VI1 CT943659.1-201ENSMUST00000215459 326 ntBASIC17.92■□□□□ 0.46
Trim56Q80VI1 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim56Q80VI1 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim56Q80VI1 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim56Q80VI1 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim56Q80VI1 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
Trim56Q80VI1 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim56Q80VI1 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
Trim56Q80VI1 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
Trim56Q80VI1 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trim56Q80VI1 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim56Q80VI1 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim56Q80VI1 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim56Q80VI1 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim56Q80VI1 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim56Q80VI1 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trim56Q80VI1 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim56Q80VI1 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim56Q80VI1 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC17.91■□□□□ 0.46
Trim56Q80VI1 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC17.91■□□□□ 0.46
Trim56Q80VI1 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Trim56Q80VI1 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trim56Q80VI1 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Trim56Q80VI1 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim56Q80VI1 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trim56Q80VI1 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Trim56Q80VI1 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim56Q80VI1 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Trim56Q80VI1 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trim56Q80VI1 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim56Q80VI1 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim56Q80VI1 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trim56Q80VI1 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trim56Q80VI1 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim56Q80VI1 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
Trim56Q80VI1 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
Trim56Q80VI1 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.46
Trim56Q80VI1 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Trim56Q80VI1 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim56Q80VI1 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim56Q80VI1 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim56Q80VI1 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Trim56Q80VI1 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim56Q80VI1 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC17.89■□□□□ 0.45
Trim56Q80VI1 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC17.89■□□□□ 0.45
Trim56Q80VI1 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC17.89■□□□□ 0.45
Trim56Q80VI1 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim56Q80VI1 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim56Q80VI1 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim56Q80VI1 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC17.89■□□□□ 0.45
Trim56Q80VI1 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Trim56Q80VI1 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Trim56Q80VI1 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC17.89■□□□□ 0.45
Trim56Q80VI1 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim56Q80VI1 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Trim56Q80VI1 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim56Q80VI1 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim56Q80VI1 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
Trim56Q80VI1 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Trim56Q80VI1 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim56Q80VI1 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms