Protein–RNA interactions for Protein: Q6PFD9

Nup98, Nuclear pore complex protein Nup98-Nup96, mousemouse

Known RBP Predictions only

Length 1,816 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup98Q6PFD9 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Nup98Q6PFD9 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Nup98Q6PFD9 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC17.73■□□□□ 0.43
Nup98Q6PFD9 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Nup98Q6PFD9 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Nup98Q6PFD9 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Nup98Q6PFD9 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Nup98Q6PFD9 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Nup98Q6PFD9 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Nup98Q6PFD9 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC17.73■□□□□ 0.43
Nup98Q6PFD9 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC17.72■□□□□ 0.43
Nup98Q6PFD9 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nup98Q6PFD9 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC17.72■□□□□ 0.43
Nup98Q6PFD9 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC17.72■□□□□ 0.43
Nup98Q6PFD9 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nup98Q6PFD9 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Nup98Q6PFD9 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Nup98Q6PFD9 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nup98Q6PFD9 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nup98Q6PFD9 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC17.72■□□□□ 0.43
Nup98Q6PFD9 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Nup98Q6PFD9 Gm44344-201ENSMUST00000200287 129 ntBASIC17.72■□□□□ 0.43
Nup98Q6PFD9 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC17.72■□□□□ 0.43
Nup98Q6PFD9 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nup98Q6PFD9 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nup98Q6PFD9 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC17.71■□□□□ 0.43
Nup98Q6PFD9 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nup98Q6PFD9 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Nup98Q6PFD9 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nup98Q6PFD9 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Nup98Q6PFD9 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nup98Q6PFD9 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC17.71■□□□□ 0.43
Nup98Q6PFD9 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC17.71■□□□□ 0.43
Nup98Q6PFD9 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC17.71■□□□□ 0.43
Nup98Q6PFD9 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nup98Q6PFD9 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nup98Q6PFD9 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nup98Q6PFD9 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Nup98Q6PFD9 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Nup98Q6PFD9 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nup98Q6PFD9 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC17.71■□□□□ 0.43
Nup98Q6PFD9 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nup98Q6PFD9 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nup98Q6PFD9 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.42
Nup98Q6PFD9 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
Nup98Q6PFD9 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Nup98Q6PFD9 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Nup98Q6PFD9 Gm9726-201ENSMUST00000180321 678 ntBASIC17.7■□□□□ 0.42
Nup98Q6PFD9 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC17.7■□□□□ 0.42
Nup98Q6PFD9 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Nup98Q6PFD9 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Nup98Q6PFD9 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Nup98Q6PFD9 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Nup98Q6PFD9 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Nup98Q6PFD9 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Nup98Q6PFD9 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Nup98Q6PFD9 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Nup98Q6PFD9 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Nup98Q6PFD9 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Nup98Q6PFD9 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Nup98Q6PFD9 Mir6977-201ENSMUST00000184960 64 ntBASIC17.7■□□□□ 0.42
Nup98Q6PFD9 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Nup98Q6PFD9 Gm9063-201ENSMUST00000223299 582 ntBASIC17.7■□□□□ 0.42
Nup98Q6PFD9 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Nup98Q6PFD9 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Nup98Q6PFD9 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Nup98Q6PFD9 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nup98Q6PFD9 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
Nup98Q6PFD9 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nup98Q6PFD9 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Nup98Q6PFD9 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Nup98Q6PFD9 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Nup98Q6PFD9 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nup98Q6PFD9 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nup98Q6PFD9 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC17.69■□□□□ 0.42
Nup98Q6PFD9 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Nup98Q6PFD9 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Nup98Q6PFD9 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nup98Q6PFD9 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nup98Q6PFD9 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nup98Q6PFD9 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Nup98Q6PFD9 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nup98Q6PFD9 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nup98Q6PFD9 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nup98Q6PFD9 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nup98Q6PFD9 Gm42918-201ENSMUST00000199249 1580 ntBASIC17.69■□□□□ 0.42
Nup98Q6PFD9 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Nup98Q6PFD9 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC17.68■□□□□ 0.42
Nup98Q6PFD9 Gm42901-201ENSMUST00000197735 3171 ntBASIC17.68■□□□□ 0.42
Nup98Q6PFD9 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Nup98Q6PFD9 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Nup98Q6PFD9 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC17.68■□□□□ 0.42
Nup98Q6PFD9 Gm24694-201ENSMUST00000180054 110 ntBASIC17.68■□□□□ 0.42
Nup98Q6PFD9 Mir8102-201ENSMUST00000184148 139 ntBASIC17.68■□□□□ 0.42
Nup98Q6PFD9 Gm27663-201ENSMUST00000184839 110 ntBASIC17.68■□□□□ 0.42
Nup98Q6PFD9 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC17.68■□□□□ 0.42
Nup98Q6PFD9 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC17.68■□□□□ 0.42
Nup98Q6PFD9 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC17.68■□□□□ 0.42
Nup98Q6PFD9 Shd-206ENSMUST00000225145 998 ntBASIC17.68■□□□□ 0.42
Nup98Q6PFD9 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms