Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC18.24■□□□□ 0.51
Vps54Q5SPW0 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC18.24■□□□□ 0.51
Vps54Q5SPW0 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vps54Q5SPW0 Thap2-203ENSMUST00000218989 527 ntBASIC18.24■□□□□ 0.51
Vps54Q5SPW0 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
Vps54Q5SPW0 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vps54Q5SPW0 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Vps54Q5SPW0 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vps54Q5SPW0 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vps54Q5SPW0 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vps54Q5SPW0 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vps54Q5SPW0 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Vps54Q5SPW0 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Vps54Q5SPW0 Gm43352-201ENSMUST00000196419 3065 ntBASIC18.24■□□□□ 0.51
Vps54Q5SPW0 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Vps54Q5SPW0 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vps54Q5SPW0 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vps54Q5SPW0 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vps54Q5SPW0 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC18.23■□□□□ 0.51
Vps54Q5SPW0 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Vps54Q5SPW0 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vps54Q5SPW0 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vps54Q5SPW0 Gm16198-201ENSMUST00000118766 670 ntBASIC18.23■□□□□ 0.51
Vps54Q5SPW0 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
Vps54Q5SPW0 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Vps54Q5SPW0 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vps54Q5SPW0 Gm37935-201ENSMUST00000192012 982 ntBASIC18.23■□□□□ 0.51
Vps54Q5SPW0 AC225888.1-201ENSMUST00000227184 728 ntBASIC18.23■□□□□ 0.51
Vps54Q5SPW0 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vps54Q5SPW0 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vps54Q5SPW0 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC18.23■□□□□ 0.51
Vps54Q5SPW0 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vps54Q5SPW0 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vps54Q5SPW0 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC18.23■□□□□ 0.51
Vps54Q5SPW0 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Vps54Q5SPW0 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Celf4-206ENSMUST00000224553 1729 ntBASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Vps54Q5SPW0 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps54Q5SPW0 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Vps54Q5SPW0 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps54Q5SPW0 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps54Q5SPW0 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC18.21■□□□□ 0.51
Vps54Q5SPW0 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC18.21■□□□□ 0.51
Vps54Q5SPW0 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps54Q5SPW0 Gm9385-201ENSMUST00000117563 472 ntBASIC18.21■□□□□ 0.51
Vps54Q5SPW0 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Vps54Q5SPW0 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC18.21■□□□□ 0.51
Vps54Q5SPW0 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps54Q5SPW0 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps54Q5SPW0 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps54Q5SPW0 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC18.21■□□□□ 0.51
Vps54Q5SPW0 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Vps54Q5SPW0 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps54Q5SPW0 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps54Q5SPW0 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps54Q5SPW0 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Vps54Q5SPW0 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Vps54Q5SPW0 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Vps54Q5SPW0 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Vps54Q5SPW0 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vps54Q5SPW0 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
Vps54Q5SPW0 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vps54Q5SPW0 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC18.2■□□□□ 0.5
Vps54Q5SPW0 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Vps54Q5SPW0 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC18.2■□□□□ 0.5
Vps54Q5SPW0 Gm4913-201ENSMUST00000117075 1290 ntBASIC18.2■□□□□ 0.5
Vps54Q5SPW0 Gm14822-201ENSMUST00000122247 291 ntBASIC18.2■□□□□ 0.5
Vps54Q5SPW0 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Vps54Q5SPW0 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Vps54Q5SPW0 AC164567.1-201ENSMUST00000219185 960 ntBASIC18.2■□□□□ 0.5
Vps54Q5SPW0 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Vps54Q5SPW0 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vps54Q5SPW0 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
Vps54Q5SPW0 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Vps54Q5SPW0 CT010478.1-201ENSMUST00000220747 2787 ntBASIC18.2■□□□□ 0.5
Vps54Q5SPW0 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC18.2■□□□□ 0.5
Vps54Q5SPW0 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC18.2■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms