Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TDP1Q9NUW8 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
TDP1Q9NUW8 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
TDP1Q9NUW8 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
TDP1Q9NUW8 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TDP1Q9NUW8 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
TDP1Q9NUW8 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 AC093909.1-201ENST00000504731 1122 ntBASIC18.63■□□□□ 0.57
TDP1Q9NUW8 RNPS1P1-201ENST00000507437 918 ntBASIC18.63■□□□□ 0.57
TDP1Q9NUW8 AC073648.2-201ENST00000510116 352 ntBASIC18.63■□□□□ 0.57
TDP1Q9NUW8 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 IL9RP2-201ENST00000423948 1312 ntBASIC18.63■□□□□ 0.57
TDP1Q9NUW8 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TDP1Q9NUW8 ESPNP-201ENST00000270691 2015 ntBASIC18.62■□□□□ 0.57
TDP1Q9NUW8 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TDP1Q9NUW8 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.62■□□□□ 0.57
TDP1Q9NUW8 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TDP1Q9NUW8 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
TDP1Q9NUW8 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TDP1Q9NUW8 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC18.62■□□□□ 0.57
TDP1Q9NUW8 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.62■□□□□ 0.57
TDP1Q9NUW8 AC018712.1-201ENST00000455767 687 ntBASIC18.62■□□□□ 0.57
TDP1Q9NUW8 SCARNA2-201ENST00000458748 420 ntBASIC18.62■□□□□ 0.57
TDP1Q9NUW8 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC18.62■□□□□ 0.57
TDP1Q9NUW8 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TDP1Q9NUW8 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.62■□□□□ 0.57
TDP1Q9NUW8 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.62■□□□□ 0.57
TDP1Q9NUW8 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.62■□□□□ 0.57
TDP1Q9NUW8 NME4-212ENST00000621774 904 ntTSL 3 BASIC18.62■□□□□ 0.57
TDP1Q9NUW8 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.62■□□□□ 0.57
TDP1Q9NUW8 ABBA01031661.1-201ENST00000634362 1253 ntBASIC18.62■□□□□ 0.57
TDP1Q9NUW8 AP005117.1-201ENST00000584346 1413 ntBASIC18.62■□□□□ 0.57
TDP1Q9NUW8 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TDP1Q9NUW8 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TDP1Q9NUW8 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TDP1Q9NUW8 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TDP1Q9NUW8 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.62■□□□□ 0.57
TDP1Q9NUW8 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TDP1Q9NUW8 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TDP1Q9NUW8 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.62■□□□□ 0.57
TDP1Q9NUW8 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TDP1Q9NUW8 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 AC126763.1-201ENST00000552015 2118 ntBASIC18.61■□□□□ 0.57
TDP1Q9NUW8 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 ABCD1P5-201ENST00000445663 754 ntBASIC18.61■□□□□ 0.57
TDP1Q9NUW8 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
TDP1Q9NUW8 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms