Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim47Q8C0E3 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC16.87■□□□□ 0.29
Trim47Q8C0E3 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim47Q8C0E3 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Trim47Q8C0E3 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim47Q8C0E3 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim47Q8C0E3 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim47Q8C0E3 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
Trim47Q8C0E3 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
Trim47Q8C0E3 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Trim47Q8C0E3 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC16.87■□□□□ 0.29
Trim47Q8C0E3 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim47Q8C0E3 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Trim47Q8C0E3 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC16.87■□□□□ 0.29
Trim47Q8C0E3 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Gm12008-201ENSMUST00000117791 755 ntBASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Gm2213-201ENSMUST00000197485 688 ntBASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Trim47Q8C0E3 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim47Q8C0E3 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Trim47Q8C0E3 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC16.85■□□□□ 0.29
Trim47Q8C0E3 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim47Q8C0E3 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
Trim47Q8C0E3 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim47Q8C0E3 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim47Q8C0E3 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC16.85■□□□□ 0.29
Trim47Q8C0E3 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trim47Q8C0E3 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC16.85■□□□□ 0.29
Trim47Q8C0E3 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim47Q8C0E3 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim47Q8C0E3 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC16.85■□□□□ 0.29
Trim47Q8C0E3 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim47Q8C0E3 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim47Q8C0E3 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
Trim47Q8C0E3 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim47Q8C0E3 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC16.85■□□□□ 0.29
Trim47Q8C0E3 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Gm27702-201ENSMUST00000184512 56 ntBASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim47Q8C0E3 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms