Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3bQ3ULL6 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Gm37812-201ENSMUST00000195216 2475 ntBASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 AC154412.1-201ENSMUST00000226540 2786 ntBASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Gm10499-201ENSMUST00000174094 934 ntBASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Gm4899-201ENSMUST00000178708 719 ntBASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3bQ3ULL6 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Best4-ps-201ENSMUST00000129783 1380 ntBASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3bQ3ULL6 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3bQ3ULL6 Gm5184-201ENSMUST00000220417 1702 ntBASIC16.28■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms