Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Fgf17-202ENSMUST00000227123 1336 ntBASIC13.15□□□□□ -0.3
Nkx3-1P97436 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Gm43125-201ENSMUST00000201724 730 ntBASIC13.15□□□□□ -0.3
Nkx3-1P97436 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Nkx3-1P97436 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Nkx3-1P97436 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.31
Nkx3-1P97436 AC025913.2-201ENSMUST00000220136 1766 ntBASIC13.15□□□□□ -0.31
Nkx3-1P97436 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Nkx3-1P97436 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC13.14□□□□□ -0.31
Nkx3-1P97436 Gm25948-201ENSMUST00000175334 112 ntBASIC13.14□□□□□ -0.31
Nkx3-1P97436 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Gm2272-201ENSMUST00000194903 582 ntBASIC13.14□□□□□ -0.31
Nkx3-1P97436 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC13.14□□□□□ -0.31
Nkx3-1P97436 Gm10154-201ENSMUST00000084445 354 ntBASIC13.14□□□□□ -0.31
Nkx3-1P97436 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC13.14□□□□□ -0.31
Nkx3-1P97436 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Nkx3-1P97436 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Gm7901-201ENSMUST00000120430 1597 ntBASIC13.13□□□□□ -0.31
Nkx3-1P97436 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC13.13□□□□□ -0.31
Nkx3-1P97436 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nkx3-1P97436 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC13.13□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms