Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim3Q9R1R2 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim3Q9R1R2 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Trim3Q9R1R2 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim3Q9R1R2 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Grk6-207ENSMUST00000225925 2769 ntBASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 AC161829.1-201ENSMUST00000220298 281 ntBASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim3Q9R1R2 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Gm4535-201ENSMUST00000182274 558 ntBASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Gm18195-201ENSMUST00000207604 706 ntBASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Gm8655-201ENSMUST00000221159 852 ntBASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Gm10355-201ENSMUST00000097146 517 ntBASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim3Q9R1R2 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Gm18856-201ENSMUST00000178096 1374 ntBASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Gm5837-201ENSMUST00000191844 1369 ntBASIC14.36□□□□□ -0.11
Trim3Q9R1R2 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Gm8097-201ENSMUST00000117903 829 ntBASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms