Protein–RNA interactions for Protein: Q9D2H5

Trim42, Tripartite motif-containing protein 42, mousemouse

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim42Q9D2H5 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim42Q9D2H5 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim42Q9D2H5 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim42Q9D2H5 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim42Q9D2H5 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim42Q9D2H5 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Trim42Q9D2H5 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim42Q9D2H5 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC15.31■□□□□ 0.04
Trim42Q9D2H5 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim42Q9D2H5 Mir5122-201ENSMUST00000175004 89 ntBASIC15.31■□□□□ 0.04
Trim42Q9D2H5 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC15.31■□□□□ 0.04
Trim42Q9D2H5 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC15.31■□□□□ 0.04
Trim42Q9D2H5 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Trim42Q9D2H5 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC15.31■□□□□ 0.04
Trim42Q9D2H5 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Trim42Q9D2H5 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim42Q9D2H5 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Trim42Q9D2H5 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Trim42Q9D2H5 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim42Q9D2H5 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim42Q9D2H5 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim42Q9D2H5 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Arhgef33-211ENSMUST00000225658 473 ntBASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
Trim42Q9D2H5 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Sorbs3-204ENSMUST00000227929 2460 ntBASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim42Q9D2H5 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim42Q9D2H5 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim42Q9D2H5 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim42Q9D2H5 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim42Q9D2H5 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim42Q9D2H5 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim42Q9D2H5 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC15.28■□□□□ 0.04
Trim42Q9D2H5 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim42Q9D2H5 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim42Q9D2H5 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim42Q9D2H5 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim42Q9D2H5 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim42Q9D2H5 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC15.28■□□□□ 0.04
Trim42Q9D2H5 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim42Q9D2H5 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Trim42Q9D2H5 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Trim42Q9D2H5 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim42Q9D2H5 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim42Q9D2H5 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim42Q9D2H5 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim42Q9D2H5 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC15.28■□□□□ 0.04
Trim42Q9D2H5 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim42Q9D2H5 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim42Q9D2H5 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms