Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC16.05■□□□□ 0.16
Clp1Q99LI9 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clp1Q99LI9 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clp1Q99LI9 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clp1Q99LI9 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clp1Q99LI9 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Clp1Q99LI9 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
Clp1Q99LI9 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Clp1Q99LI9 Gm7488-201ENSMUST00000117148 684 ntBASIC16.05■□□□□ 0.16
Clp1Q99LI9 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Clp1Q99LI9 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clp1Q99LI9 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
Clp1Q99LI9 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
Clp1Q99LI9 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
Clp1Q99LI9 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC16.05■□□□□ 0.16
Clp1Q99LI9 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clp1Q99LI9 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Clp1Q99LI9 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clp1Q99LI9 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Clp1Q99LI9 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clp1Q99LI9 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Clp1Q99LI9 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clp1Q99LI9 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clp1Q99LI9 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Clp1Q99LI9 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC16.04■□□□□ 0.16
Clp1Q99LI9 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC16.04■□□□□ 0.16
Clp1Q99LI9 Gm14719-201ENSMUST00000121891 340 ntBASIC16.04■□□□□ 0.16
Clp1Q99LI9 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Hist1h2al-201ENSMUST00000091708 339 ntBASIC16.04■□□□□ 0.16
Clp1Q99LI9 Gm14026-201ENSMUST00000120625 1789 ntBASIC16.04■□□□□ 0.16
Clp1Q99LI9 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clp1Q99LI9 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clp1Q99LI9 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC16.03■□□□□ 0.16
Clp1Q99LI9 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Clp1Q99LI9 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Clp1Q99LI9 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Clp1Q99LI9 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Clp1Q99LI9 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC16.03■□□□□ 0.16
Clp1Q99LI9 Gm8597-201ENSMUST00000191525 1109 ntBASIC16.03■□□□□ 0.16
Clp1Q99LI9 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Clp1Q99LI9 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Clp1Q99LI9 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Clp1Q99LI9 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Clp1Q99LI9 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Clp1Q99LI9 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Clp1Q99LI9 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Clp1Q99LI9 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Clp1Q99LI9 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
Clp1Q99LI9 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Clp1Q99LI9 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Clp1Q99LI9 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Clp1Q99LI9 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Clp1Q99LI9 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Clp1Q99LI9 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Clp1Q99LI9 Gm7292-201ENSMUST00000194706 2527 ntBASIC16.02■□□□□ 0.16
Clp1Q99LI9 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Clp1Q99LI9 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC16.02■□□□□ 0.16
Clp1Q99LI9 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Clp1Q99LI9 Gm6539-201ENSMUST00000119157 1064 ntBASIC16.02■□□□□ 0.16
Clp1Q99LI9 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Clp1Q99LI9 Gm15487-201ENSMUST00000122373 465 ntBASIC16.02■□□□□ 0.16
Clp1Q99LI9 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Clp1Q99LI9 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC16.02■□□□□ 0.16
Clp1Q99LI9 AC132863.2-201ENSMUST00000226643 799 ntBASIC16.02■□□□□ 0.16
Clp1Q99LI9 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Clp1Q99LI9 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Clp1Q99LI9 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Clp1Q99LI9 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Clp1Q99LI9 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
Clp1Q99LI9 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Clp1Q99LI9 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Clp1Q99LI9 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Clp1Q99LI9 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC16.02■□□□□ 0.15
Clp1Q99LI9 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Clp1Q99LI9 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Clp1Q99LI9 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Clp1Q99LI9 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms