Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
Trim40Q3UWA4 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trim40Q3UWA4 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim40Q3UWA4 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim40Q3UWA4 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Gm30437-201ENSMUST00000206086 1201 ntBASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC14.36□□□□□ -0.11
Trim40Q3UWA4 AC159649.2-201ENSMUST00000222984 3223 ntBASIC14.36□□□□□ -0.11
Trim40Q3UWA4 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim40Q3UWA4 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Gm27389-201ENSMUST00000183622 195 ntBASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Mir6404-201ENSMUST00000183699 94 ntBASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Gm45058-201ENSMUST00000205810 766 ntBASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 AC112142.1-201ENSMUST00000228796 918 ntBASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim40Q3UWA4 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim40Q3UWA4 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim40Q3UWA4 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim40Q3UWA4 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim40Q3UWA4 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim40Q3UWA4 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim40Q3UWA4 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim40Q3UWA4 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim40Q3UWA4 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim40Q3UWA4 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim40Q3UWA4 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim40Q3UWA4 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC14.34□□□□□ -0.11
Trim40Q3UWA4 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC14.34□□□□□ -0.11
Trim40Q3UWA4 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim40Q3UWA4 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim40Q3UWA4 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim40Q3UWA4 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim40Q3UWA4 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC14.34□□□□□ -0.11
Trim40Q3UWA4 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC14.34□□□□□ -0.11
Trim40Q3UWA4 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim40Q3UWA4 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim40Q3UWA4 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC14.34□□□□□ -0.11
Trim40Q3UWA4 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trim40Q3UWA4 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC14.33□□□□□ -0.11
Trim40Q3UWA4 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trim40Q3UWA4 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
Trim40Q3UWA4 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC14.33□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms