Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 AC154527.4-201ENSMUST00000224364 1667 ntBASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Upf3bQ3ULL6 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 AC147366.1-201ENSMUST00000227671 852 ntBASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Upf3bQ3ULL6 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Upf3bQ3ULL6 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Upf3bQ3ULL6 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC16.33■□□□□ 0.21
Upf3bQ3ULL6 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Upf3bQ3ULL6 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Upf3bQ3ULL6 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3bQ3ULL6 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3bQ3ULL6 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3bQ3ULL6 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3bQ3ULL6 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3bQ3ULL6 Gm27628-201ENSMUST00000184911 107 ntBASIC16.33■□□□□ 0.2
Upf3bQ3ULL6 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Upf3bQ3ULL6 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3bQ3ULL6 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3bQ3ULL6 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3bQ3ULL6 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3bQ3ULL6 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3bQ3ULL6 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Upf3bQ3ULL6 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3bQ3ULL6 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3bQ3ULL6 Sybu-209ENSMUST00000228639 4113 ntBASIC16.33■□□□□ 0.2
Upf3bQ3ULL6 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Upf3bQ3ULL6 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Upf3bQ3ULL6 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 Gm7901-201ENSMUST00000120430 1597 ntBASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3bQ3ULL6 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC16.32■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 73.1 ms