Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
RaraP11416 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RaraP11416 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
RaraP11416 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RaraP11416 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
RaraP11416 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RaraP11416 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
RaraP11416 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RaraP11416 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
RaraP11416 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
RaraP11416 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
RaraP11416 Gm7556-201ENSMUST00000201178 1084 ntBASIC16.53■□□□□ 0.24
RaraP11416 Cmtm5-203ENSMUST00000227441 610 ntBASIC16.53■□□□□ 0.24
RaraP11416 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
RaraP11416 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RaraP11416 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RaraP11416 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RaraP11416 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
RaraP11416 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
RaraP11416 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RaraP11416 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC16.53■□□□□ 0.24
RaraP11416 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RaraP11416 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RaraP11416 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
RaraP11416 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RaraP11416 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
RaraP11416 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RaraP11416 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RaraP11416 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RaraP11416 Gm8242-201ENSMUST00000193029 1420 ntBASIC16.53■□□□□ 0.24
RaraP11416 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
RaraP11416 Gm5837-201ENSMUST00000191844 1369 ntBASIC16.52■□□□□ 0.24
RaraP11416 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
RaraP11416 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
RaraP11416 Gm7935-201ENSMUST00000100555 1278 ntBASIC16.52■□□□□ 0.24
RaraP11416 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC16.52■□□□□ 0.24
RaraP11416 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC16.52■□□□□ 0.24
RaraP11416 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC16.52■□□□□ 0.24
RaraP11416 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC16.52■□□□□ 0.24
RaraP11416 AC093926.2-201ENSMUST00000214468 1228 ntBASIC16.52■□□□□ 0.24
RaraP11416 AC122024.2-201ENSMUST00000220086 871 ntBASIC16.52■□□□□ 0.24
RaraP11416 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
RaraP11416 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
RaraP11416 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
RaraP11416 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
RaraP11416 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
RaraP11416 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
RaraP11416 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RaraP11416 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RaraP11416 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RaraP11416 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
RaraP11416 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC16.51■□□□□ 0.23
RaraP11416 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RaraP11416 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
RaraP11416 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RaraP11416 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RaraP11416 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RaraP11416 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RaraP11416 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC16.51■□□□□ 0.23
RaraP11416 Gm15358-201ENSMUST00000119249 520 ntBASIC16.51■□□□□ 0.23
RaraP11416 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC16.51■□□□□ 0.23
RaraP11416 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC16.51■□□□□ 0.23
RaraP11416 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC16.51■□□□□ 0.23
RaraP11416 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RaraP11416 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RaraP11416 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
RaraP11416 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
RaraP11416 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
RaraP11416 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
RaraP11416 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RaraP11416 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RaraP11416 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RaraP11416 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
RaraP11416 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RaraP11416 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RaraP11416 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RaraP11416 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RaraP11416 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RaraP11416 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RaraP11416 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
RaraP11416 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RaraP11416 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RaraP11416 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RaraP11416 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RaraP11416 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RaraP11416 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
RaraP11416 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RaraP11416 Gm8097-201ENSMUST00000117903 829 ntBASIC16.5■□□□□ 0.23
RaraP11416 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC16.5■□□□□ 0.23
RaraP11416 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC16.5■□□□□ 0.23
RaraP11416 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
RaraP11416 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RaraP11416 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC16.5■□□□□ 0.23
RaraP11416 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RaraP11416 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
RaraP11416 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RaraP11416 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
RaraP11416 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
RaraP11416 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
RaraP11416 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC16.5■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms