Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col1a1P11087 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
Col1a1P11087 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col1a1P11087 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col1a1P11087 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col1a1P11087 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col1a1P11087 Gm15653-201ENSMUST00000119247 907 ntBASIC17.71■□□□□ 0.43
Col1a1P11087 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC17.71■□□□□ 0.43
Col1a1P11087 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC17.71■□□□□ 0.43
Col1a1P11087 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC17.71■□□□□ 0.43
Col1a1P11087 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Col1a1P11087 Gm6218-201ENSMUST00000219812 628 ntBASIC17.71■□□□□ 0.43
Col1a1P11087 Shd-206ENSMUST00000225145 998 ntBASIC17.71■□□□□ 0.43
Col1a1P11087 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col1a1P11087 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col1a1P11087 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col1a1P11087 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC17.71■□□□□ 0.43
Col1a1P11087 Gm6263-201ENSMUST00000120029 1342 ntBASIC17.71■□□□□ 0.43
Col1a1P11087 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col1a1P11087 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col1a1P11087 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col1a1P11087 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col1a1P11087 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC17.7■□□□□ 0.42
Col1a1P11087 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Col1a1P11087 Gm4875-201ENSMUST00000118257 786 ntBASIC17.7■□□□□ 0.42
Col1a1P11087 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC17.7■□□□□ 0.42
Col1a1P11087 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Col1a1P11087 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Col1a1P11087 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC17.7■□□□□ 0.42
Col1a1P11087 Gm43703-201ENSMUST00000200523 763 ntBASIC17.7■□□□□ 0.42
Col1a1P11087 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC17.7■□□□□ 0.42
Col1a1P11087 Cdk7-205ENSMUST00000225990 1159 ntBASIC17.7■□□□□ 0.42
Col1a1P11087 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col1a1P11087 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Col1a1P11087 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC17.7■□□□□ 0.42
Col1a1P11087 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
Col1a1P11087 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col1a1P11087 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Col1a1P11087 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Col1a1P11087 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Col1a1P11087 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col1a1P11087 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Col1a1P11087 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col1a1P11087 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col1a1P11087 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col1a1P11087 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Col1a1P11087 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
Col1a1P11087 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col1a1P11087 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC17.69■□□□□ 0.42
Col1a1P11087 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col1a1P11087 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Col1a1P11087 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC17.69■□□□□ 0.42
Col1a1P11087 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col1a1P11087 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col1a1P11087 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col1a1P11087 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col1a1P11087 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Col1a1P11087 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Col1a1P11087 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col1a1P11087 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col1a1P11087 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC17.69■□□□□ 0.42
Col1a1P11087 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC17.69■□□□□ 0.42
Col1a1P11087 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col1a1P11087 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col1a1P11087 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col1a1P11087 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col1a1P11087 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col1a1P11087 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col1a1P11087 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col1a1P11087 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col1a1P11087 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col1a1P11087 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col1a1P11087 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
Col1a1P11087 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col1a1P11087 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col1a1P11087 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col1a1P11087 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC17.69■□□□□ 0.42
Col1a1P11087 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC17.69■□□□□ 0.42
Col1a1P11087 Gm3436-201ENSMUST00000179930 840 ntBASIC17.69■□□□□ 0.42
Col1a1P11087 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Col1a1P11087 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col1a1P11087 Gm20628-201ENSMUST00000177363 3215 ntBASIC17.69■□□□□ 0.42
Col1a1P11087 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col1a1P11087 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC17.68■□□□□ 0.42
Col1a1P11087 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC17.68■□□□□ 0.42
Col1a1P11087 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC17.68■□□□□ 0.42
Col1a1P11087 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col1a1P11087 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col1a1P11087 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Col1a1P11087 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col1a1P11087 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Col1a1P11087 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Col1a1P11087 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col1a1P11087 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col1a1P11087 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Col1a1P11087 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Col1a1P11087 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col1a1P11087 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Col1a1P11087 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col1a1P11087 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms