Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Gm17807-201ENSMUST00000186869 298 ntBASIC16.43■□□□□ 0.22
Nr1i3O35627 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC16.43■□□□□ 0.22
Nr1i3O35627 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1i3O35627 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1i3O35627 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1i3O35627 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1i3O35627 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1i3O35627 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1i3O35627 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1i3O35627 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1i3O35627 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
Nr1i3O35627 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1i3O35627 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1i3O35627 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1i3O35627 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1i3O35627 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC16.42■□□□□ 0.22
Nr1i3O35627 Gm38318-201ENSMUST00000195769 1706 ntBASIC16.42■□□□□ 0.22
Nr1i3O35627 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1i3O35627 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1i3O35627 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC16.42■□□□□ 0.22
Nr1i3O35627 Grk6-207ENSMUST00000225925 2769 ntBASIC16.42■□□□□ 0.22
Nr1i3O35627 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1i3O35627 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1i3O35627 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1i3O35627 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Nr1i3O35627 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1i3O35627 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1i3O35627 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1i3O35627 Gm14780-201ENSMUST00000118387 2737 ntBASIC16.42■□□□□ 0.22
Nr1i3O35627 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1i3O35627 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1i3O35627 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1i3O35627 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1i3O35627 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
Nr1i3O35627 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1i3O35627 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1i3O35627 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1i3O35627 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1i3O35627 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1i3O35627 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1i3O35627 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1i3O35627 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1i3O35627 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1i3O35627 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1i3O35627 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1i3O35627 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1i3O35627 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1i3O35627 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1i3O35627 Gm27646-201ENSMUST00000183989 110 ntBASIC16.41■□□□□ 0.22
Nr1i3O35627 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1i3O35627 Gm6296-201ENSMUST00000222599 943 ntBASIC16.41■□□□□ 0.22
Nr1i3O35627 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1i3O35627 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1i3O35627 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1i3O35627 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1i3O35627 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1i3O35627 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC16.41■□□□□ 0.22
Nr1i3O35627 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1i3O35627 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1i3O35627 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1i3O35627 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1i3O35627 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1i3O35627 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1i3O35627 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1i3O35627 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1i3O35627 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1i3O35627 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Nr1i3O35627 Gm11780-201ENSMUST00000136880 516 ntBASIC16.4■□□□□ 0.22
Nr1i3O35627 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1i3O35627 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1i3O35627 Gm37584-201ENSMUST00000193595 1290 ntBASIC16.4■□□□□ 0.22
Nr1i3O35627 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC16.4■□□□□ 0.22
Nr1i3O35627 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1i3O35627 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1i3O35627 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1i3O35627 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1i3O35627 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1i3O35627 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1i3O35627 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Nr1i3O35627 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Nr1i3O35627 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Nr1i3O35627 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Nr1i3O35627 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Nr1i3O35627 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Nr1i3O35627 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Nr1i3O35627 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Nr1i3O35627 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Nr1i3O35627 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC16.39■□□□□ 0.21
Nr1i3O35627 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC16.39■□□□□ 0.21
Nr1i3O35627 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC16.39■□□□□ 0.21
Nr1i3O35627 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Nr1i3O35627 AC160338.1-201ENSMUST00000214232 705 ntBASIC16.39■□□□□ 0.21
Nr1i3O35627 Gm18669-201ENSMUST00000216049 778 ntBASIC16.39■□□□□ 0.21
Nr1i3O35627 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Nr1i3O35627 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC16.39■□□□□ 0.21
Nr1i3O35627 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Nr1i3O35627 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Nr1i3O35627 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Nr1i3O35627 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Nr1i3O35627 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms