Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Gm4459-201ENSMUST00000118750 468 ntBASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Gm6257-201ENSMUST00000163864 910 ntBASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Gm6376-201ENSMUST00000209407 580 ntBASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim3Q9R1R2 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim3Q9R1R2 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
Trim3Q9R1R2 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim3Q9R1R2 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim3Q9R1R2 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim3Q9R1R2 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim3Q9R1R2 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim3Q9R1R2 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim3Q9R1R2 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC14.39□□□□□ -0.11
Trim3Q9R1R2 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim3Q9R1R2 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim3Q9R1R2 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim3Q9R1R2 Gm7862-201ENSMUST00000121461 292 ntBASIC14.39□□□□□ -0.11
Trim3Q9R1R2 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC14.39□□□□□ -0.11
Trim3Q9R1R2 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim3Q9R1R2 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim3Q9R1R2 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim3Q9R1R2 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim3Q9R1R2 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC14.39□□□□□ -0.11
Trim3Q9R1R2 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim3Q9R1R2 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim3Q9R1R2 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Trim3Q9R1R2 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms