Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 Gm13036-201ENSMUST00000117799 748 ntBASIC17.16■□□□□ 0.34
Ushbp1Q8R370 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC17.16■□□□□ 0.34
Ushbp1Q8R370 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 AC154757.1-201ENSMUST00000228289 336 ntBASIC17.16■□□□□ 0.34
Ushbp1Q8R370 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Gm11839-201ENSMUST00000120647 1953 ntBASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Gm37500-201ENSMUST00000192059 1443 ntBASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Gm6184-201ENSMUST00000120403 1261 ntBASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ushbp1Q8R370 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Ushbp1Q8R370 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC17.14■□□□□ 0.34
Ushbp1Q8R370 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Ushbp1Q8R370 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Gm11780-201ENSMUST00000136880 516 ntBASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Gm7286-201ENSMUST00000182691 1007 ntBASIC17.14■□□□□ 0.33
Ushbp1Q8R370 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Ushbp1Q8R370 AC122901.1-201ENSMUST00000214203 1790 ntBASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ushbp1Q8R370 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
Ushbp1Q8R370 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
Ushbp1Q8R370 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ushbp1Q8R370 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ushbp1Q8R370 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ushbp1Q8R370 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Ushbp1Q8R370 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ushbp1Q8R370 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ushbp1Q8R370 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
Ushbp1Q8R370 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ushbp1Q8R370 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
Ushbp1Q8R370 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Ushbp1Q8R370 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Ushbp1Q8R370 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Ushbp1Q8R370 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ushbp1Q8R370 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ushbp1Q8R370 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ushbp1Q8R370 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ushbp1Q8R370 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Ushbp1Q8R370 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ushbp1Q8R370 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ushbp1Q8R370 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ushbp1Q8R370 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC17.12■□□□□ 0.33
Ushbp1Q8R370 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms