Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC19.79■□□□□ 0.76
Trim28Q62318 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim28Q62318 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Trim28Q62318 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim28Q62318 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim28Q62318 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim28Q62318 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Trim28Q62318 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim28Q62318 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Trim28Q62318 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim28Q62318 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim28Q62318 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC19.79■□□□□ 0.76
Trim28Q62318 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC19.79■□□□□ 0.76
Trim28Q62318 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC19.79■□□□□ 0.76
Trim28Q62318 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC19.79■□□□□ 0.76
Trim28Q62318 Gm44872-201ENSMUST00000207864 420 ntBASIC19.79■□□□□ 0.76
Trim28Q62318 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim28Q62318 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
Trim28Q62318 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim28Q62318 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim28Q62318 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim28Q62318 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim28Q62318 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim28Q62318 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Trim28Q62318 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim28Q62318 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim28Q62318 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim28Q62318 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim28Q62318 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Trim28Q62318 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim28Q62318 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim28Q62318 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Trim28Q62318 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Trim28Q62318 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim28Q62318 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim28Q62318 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim28Q62318 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim28Q62318 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim28Q62318 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim28Q62318 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim28Q62318 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim28Q62318 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC19.78■□□□□ 0.76
Trim28Q62318 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC19.78■□□□□ 0.76
Trim28Q62318 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Trim28Q62318 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Trim28Q62318 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim28Q62318 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim28Q62318 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim28Q62318 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
Trim28Q62318 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim28Q62318 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim28Q62318 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC19.77■□□□□ 0.76
Trim28Q62318 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim28Q62318 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim28Q62318 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim28Q62318 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
Trim28Q62318 Gm7336-201ENSMUST00000107041 1232 ntBASIC19.77■□□□□ 0.76
Trim28Q62318 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim28Q62318 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim28Q62318 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC19.77■□□□□ 0.76
Trim28Q62318 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC19.77■□□□□ 0.76
Trim28Q62318 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Trim28Q62318 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim28Q62318 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Trim28Q62318 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC19.77■□□□□ 0.76
Trim28Q62318 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim28Q62318 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Trim28Q62318 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
Trim28Q62318 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Trim28Q62318 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim28Q62318 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim28Q62318 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim28Q62318 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Trim28Q62318 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC19.77■□□□□ 0.76
Trim28Q62318 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
Trim28Q62318 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Trim28Q62318 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC19.76■□□□□ 0.75
Trim28Q62318 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Trim28Q62318 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim28Q62318 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim28Q62318 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim28Q62318 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim28Q62318 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim28Q62318 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim28Q62318 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
Trim28Q62318 Gm10313-201ENSMUST00000095320 1002 ntBASIC19.76■□□□□ 0.75
Trim28Q62318 Mxra8os-201ENSMUST00000097740 687 ntBASIC19.76■□□□□ 0.75
Trim28Q62318 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim28Q62318 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim28Q62318 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim28Q62318 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC19.76■□□□□ 0.75
Trim28Q62318 Fgf17-202ENSMUST00000227123 1336 ntBASIC19.76■□□□□ 0.75
Trim28Q62318 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Trim28Q62318 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trim28Q62318 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Trim28Q62318 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trim28Q62318 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trim28Q62318 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trim28Q62318 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
Trim28Q62318 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms