Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim27Q62158 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim27Q62158 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim27Q62158 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Trim27Q62158 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim27Q62158 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim27Q62158 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Trim27Q62158 Best4-ps-201ENSMUST00000129783 1380 ntBASIC18.79■□□□□ 0.6
Trim27Q62158 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim27Q62158 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim27Q62158 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Trim27Q62158 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim27Q62158 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim27Q62158 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim27Q62158 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim27Q62158 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim27Q62158 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC18.78■□□□□ 0.6
Trim27Q62158 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim27Q62158 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim27Q62158 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim27Q62158 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim27Q62158 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim27Q62158 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim27Q62158 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim27Q62158 Mir5131-201ENSMUST00000175426 93 ntBASIC18.78■□□□□ 0.6
Trim27Q62158 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC18.78■□□□□ 0.6
Trim27Q62158 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim27Q62158 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC18.78■□□□□ 0.6
Trim27Q62158 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim27Q62158 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Trim27Q62158 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC18.78■□□□□ 0.6
Trim27Q62158 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim27Q62158 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim27Q62158 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim27Q62158 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim27Q62158 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Trim27Q62158 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Trim27Q62158 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
Trim27Q62158 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim27Q62158 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Trim27Q62158 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trim27Q62158 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim27Q62158 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trim27Q62158 Gm16425-201ENSMUST00000118143 3130 ntBASIC18.77■□□□□ 0.6
Trim27Q62158 Gm14780-201ENSMUST00000118387 2737 ntBASIC18.77■□□□□ 0.6
Trim27Q62158 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC18.77■□□□□ 0.6
Trim27Q62158 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Trim27Q62158 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trim27Q62158 Gm13036-201ENSMUST00000117799 748 ntBASIC18.77■□□□□ 0.6
Trim27Q62158 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim27Q62158 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC18.77■□□□□ 0.6
Trim27Q62158 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC18.77■□□□□ 0.6
Trim27Q62158 Gm43935-201ENSMUST00000203569 1050 ntBASIC18.77■□□□□ 0.6
Trim27Q62158 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim27Q62158 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Trim27Q62158 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim27Q62158 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trim27Q62158 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim27Q62158 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trim27Q62158 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trim27Q62158 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Trim27Q62158 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trim27Q62158 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trim27Q62158 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trim27Q62158 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trim27Q62158 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Trim27Q62158 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Trim27Q62158 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim27Q62158 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim27Q62158 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim27Q62158 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim27Q62158 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim27Q62158 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC18.76■□□□□ 0.59
Trim27Q62158 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim27Q62158 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim27Q62158 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim27Q62158 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Trim27Q62158 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim27Q62158 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC18.76■□□□□ 0.59
Trim27Q62158 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim27Q62158 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim27Q62158 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim27Q62158 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Trim27Q62158 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC18.76■□□□□ 0.59
Trim27Q62158 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC18.76■□□□□ 0.59
Trim27Q62158 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC18.76■□□□□ 0.59
Trim27Q62158 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC18.76■□□□□ 0.59
Trim27Q62158 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim27Q62158 Efs-202ENSMUST00000227037 2540 ntBASIC18.76■□□□□ 0.59
Trim27Q62158 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim27Q62158 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim27Q62158 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trim27Q62158 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim27Q62158 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim27Q62158 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim27Q62158 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim27Q62158 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC18.75■□□□□ 0.59
Trim27Q62158 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trim27Q62158 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trim27Q62158 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms