Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Upf3aQ3ULJ3 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3aQ3ULJ3 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC16.06■□□□□ 0.16
Upf3aQ3ULJ3 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3aQ3ULJ3 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3aQ3ULJ3 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3aQ3ULJ3 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3aQ3ULJ3 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3aQ3ULJ3 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3aQ3ULJ3 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC16.06■□□□□ 0.16
Upf3aQ3ULJ3 Gm18737-201ENSMUST00000173594 937 ntBASIC16.06■□□□□ 0.16
Upf3aQ3ULJ3 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3aQ3ULJ3 Gm7556-201ENSMUST00000201178 1084 ntBASIC16.06■□□□□ 0.16
Upf3aQ3ULJ3 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3aQ3ULJ3 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3aQ3ULJ3 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC16.06■□□□□ 0.16
Upf3aQ3ULJ3 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3aQ3ULJ3 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC16.06■□□□□ 0.16
Upf3aQ3ULJ3 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Upf3aQ3ULJ3 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Gm2810-201ENSMUST00000118681 990 ntBASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Upf3aQ3ULJ3 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Ntrk2-205ENSMUST00000224402 2284 ntBASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Upf3aQ3ULJ3 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 52.9 ms