Protein–RNA interactions for Protein: P97952

Scn1b, Sodium channel subunit beta-1, mousemouse

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1bP97952 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Scn1bP97952 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Scn1bP97952 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Scn1bP97952 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
Scn1bP97952 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Scn1bP97952 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Scn1bP97952 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Scn1bP97952 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Scn1bP97952 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Scn1bP97952 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Scn1bP97952 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Scn1bP97952 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Scn1bP97952 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
Scn1bP97952 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
Scn1bP97952 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
Scn1bP97952 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Scn1bP97952 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Scn1bP97952 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Scn1bP97952 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Scn1bP97952 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC14.03□□□□□ -0.16
Scn1bP97952 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Scn1bP97952 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Scn1bP97952 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Scn1bP97952 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Scn1bP97952 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Scn1bP97952 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Scn1bP97952 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Scn1bP97952 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Scn1bP97952 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Scn1bP97952 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Scn1bP97952 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Scn1bP97952 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Scn1bP97952 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC14.03□□□□□ -0.16
Scn1bP97952 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Scn1bP97952 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC14.03□□□□□ -0.16
Scn1bP97952 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC14.03□□□□□ -0.16
Scn1bP97952 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC14.03□□□□□ -0.16
Scn1bP97952 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC14.03□□□□□ -0.16
Scn1bP97952 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC14.03□□□□□ -0.16
Scn1bP97952 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Scn1bP97952 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Scn1bP97952 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Scn1bP97952 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC14.03□□□□□ -0.16
Scn1bP97952 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC14.03□□□□□ -0.16
Scn1bP97952 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Scn1bP97952 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC14.03□□□□□ -0.16
Scn1bP97952 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC14.03□□□□□ -0.16
Scn1bP97952 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Scn1bP97952 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Scn1bP97952 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC14.03□□□□□ -0.16
Scn1bP97952 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Scn1bP97952 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Scn1bP97952 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Scn1bP97952 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Scn1bP97952 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Scn1bP97952 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Scn1bP97952 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Scn1bP97952 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Scn1bP97952 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Scn1bP97952 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Scn1bP97952 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
Scn1bP97952 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Scn1bP97952 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Scn1bP97952 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
Scn1bP97952 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Scn1bP97952 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Scn1bP97952 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Scn1bP97952 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Scn1bP97952 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Scn1bP97952 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Scn1bP97952 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Scn1bP97952 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Scn1bP97952 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Scn1bP97952 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Scn1bP97952 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.17
Scn1bP97952 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Scn1bP97952 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Scn1bP97952 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC14.02□□□□□ -0.17
Scn1bP97952 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Scn1bP97952 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC14.02□□□□□ -0.17
Scn1bP97952 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Scn1bP97952 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Scn1bP97952 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Scn1bP97952 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC14.02□□□□□ -0.17
Scn1bP97952 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Scn1bP97952 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Scn1bP97952 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Scn1bP97952 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Scn1bP97952 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Scn1bP97952 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Scn1bP97952 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Scn1bP97952 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn1bP97952 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn1bP97952 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn1bP97952 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn1bP97952 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn1bP97952 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn1bP97952 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Scn1bP97952 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Scn1bP97952 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC14.01□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 69.7 ms