Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim56Q80VI1 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim56Q80VI1 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
Trim56Q80VI1 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim56Q80VI1 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim56Q80VI1 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
Trim56Q80VI1 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Trim56Q80VI1 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Trim56Q80VI1 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC18.08■□□□□ 0.48
Trim56Q80VI1 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trim56Q80VI1 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Trim56Q80VI1 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC18.08■□□□□ 0.48
Trim56Q80VI1 CT009510.1-201ENSMUST00000227972 270 ntBASIC18.08■□□□□ 0.48
Trim56Q80VI1 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim56Q80VI1 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Trim56Q80VI1 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Trim56Q80VI1 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim56Q80VI1 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim56Q80VI1 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trim56Q80VI1 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC18.08■□□□□ 0.48
Trim56Q80VI1 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Trim56Q80VI1 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim56Q80VI1 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC18.07■□□□□ 0.48
Trim56Q80VI1 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
Trim56Q80VI1 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trim56Q80VI1 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim56Q80VI1 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Trim56Q80VI1 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim56Q80VI1 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim56Q80VI1 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim56Q80VI1 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Trim56Q80VI1 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Trim56Q80VI1 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC18.06■□□□□ 0.48
Trim56Q80VI1 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim56Q80VI1 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
Trim56Q80VI1 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trim56Q80VI1 AC159295.1-201ENSMUST00000225326 940 ntBASIC18.06■□□□□ 0.48
Trim56Q80VI1 Gm10175-201ENSMUST00000086013 645 ntBASIC18.06■□□□□ 0.48
Trim56Q80VI1 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim56Q80VI1 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim56Q80VI1 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim56Q80VI1 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim56Q80VI1 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Trim56Q80VI1 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Trim56Q80VI1 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim56Q80VI1 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trim56Q80VI1 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim56Q80VI1 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trim56Q80VI1 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim56Q80VI1 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
Trim56Q80VI1 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim56Q80VI1 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Trim56Q80VI1 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Trim56Q80VI1 Asic1-205ENSMUST00000228185 1818 ntBASIC18.05■□□□□ 0.48
Trim56Q80VI1 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim56Q80VI1 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Trim56Q80VI1 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim56Q80VI1 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Trim56Q80VI1 AC025913.2-201ENSMUST00000220136 1766 ntBASIC18.05■□□□□ 0.48
Trim56Q80VI1 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC18.05■□□□□ 0.48
Trim56Q80VI1 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim56Q80VI1 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC18.05■□□□□ 0.48
Trim56Q80VI1 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Trim56Q80VI1 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim56Q80VI1 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim56Q80VI1 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim56Q80VI1 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim56Q80VI1 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Trim56Q80VI1 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim56Q80VI1 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim56Q80VI1 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim56Q80VI1 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms