Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trim28Q62318 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trim28Q62318 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
Trim28Q62318 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trim28Q62318 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC19.83■□□□□ 0.77
Trim28Q62318 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trim28Q62318 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trim28Q62318 Gm2810-201ENSMUST00000118681 990 ntBASIC19.83■□□□□ 0.77
Trim28Q62318 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Trim28Q62318 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC19.83■□□□□ 0.77
Trim28Q62318 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC19.83■□□□□ 0.77
Trim28Q62318 AC131710.1-201ENSMUST00000228336 990 ntBASIC19.83■□□□□ 0.77
Trim28Q62318 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trim28Q62318 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
Trim28Q62318 Gm13233-201ENSMUST00000118760 1443 ntBASIC19.83■□□□□ 0.76
Trim28Q62318 Gm13244-201ENSMUST00000118855 1446 ntBASIC19.83■□□□□ 0.76
Trim28Q62318 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
Trim28Q62318 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trim28Q62318 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trim28Q62318 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Trim28Q62318 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC19.82■□□□□ 0.76
Trim28Q62318 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim28Q62318 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Trim28Q62318 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim28Q62318 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Trim28Q62318 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim28Q62318 Mir449b-201ENSMUST00000104833 80 ntBASIC19.82■□□□□ 0.76
Trim28Q62318 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC19.82■□□□□ 0.76
Trim28Q62318 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim28Q62318 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Trim28Q62318 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Trim28Q62318 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC19.82■□□□□ 0.76
Trim28Q62318 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC19.82■□□□□ 0.76
Trim28Q62318 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC19.82■□□□□ 0.76
Trim28Q62318 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC19.82■□□□□ 0.76
Trim28Q62318 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim28Q62318 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim28Q62318 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim28Q62318 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim28Q62318 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim28Q62318 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Trim28Q62318 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim28Q62318 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim28Q62318 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim28Q62318 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim28Q62318 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Trim28Q62318 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Trim28Q62318 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim28Q62318 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC19.81■□□□□ 0.76
Trim28Q62318 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Trim28Q62318 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Trim28Q62318 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC19.81■□□□□ 0.76
Trim28Q62318 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim28Q62318 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Trim28Q62318 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Trim28Q62318 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Trim28Q62318 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Trim28Q62318 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC19.81■□□□□ 0.76
Trim28Q62318 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim28Q62318 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim28Q62318 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim28Q62318 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim28Q62318 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim28Q62318 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim28Q62318 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim28Q62318 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC19.81■□□□□ 0.76
Trim28Q62318 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim28Q62318 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim28Q62318 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim28Q62318 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Trim28Q62318 Gm11839-201ENSMUST00000120647 1953 ntBASIC19.81■□□□□ 0.76
Trim28Q62318 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC19.81■□□□□ 0.76
Trim28Q62318 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim28Q62318 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC19.8■□□□□ 0.76
Trim28Q62318 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim28Q62318 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Trim28Q62318 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim28Q62318 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Trim28Q62318 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
Trim28Q62318 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim28Q62318 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC19.8■□□□□ 0.76
Trim28Q62318 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC19.8■□□□□ 0.76
Trim28Q62318 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim28Q62318 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim28Q62318 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC19.8■□□□□ 0.76
Trim28Q62318 Gm25948-201ENSMUST00000175334 112 ntBASIC19.8■□□□□ 0.76
Trim28Q62318 Mir6956-201ENSMUST00000183598 62 ntBASIC19.8■□□□□ 0.76
Trim28Q62318 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Trim28Q62318 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim28Q62318 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim28Q62318 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim28Q62318 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Trim28Q62318 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim28Q62318 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim28Q62318 Gm14026-201ENSMUST00000120625 1789 ntBASIC19.8■□□□□ 0.76
Trim28Q62318 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim28Q62318 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim28Q62318 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim28Q62318 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim28Q62318 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 46.9 ms