Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lmx1bO88609 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC13.92□□□□□ -0.18
Lmx1bO88609 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC13.92□□□□□ -0.18
Lmx1bO88609 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Lmx1bO88609 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lmx1bO88609 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC13.92□□□□□ -0.18
Lmx1bO88609 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lmx1bO88609 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Lmx1bO88609 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lmx1bO88609 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lmx1bO88609 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lmx1bO88609 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC13.92□□□□□ -0.18
Lmx1bO88609 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC13.92□□□□□ -0.18
Lmx1bO88609 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lmx1bO88609 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lmx1bO88609 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC13.92□□□□□ -0.18
Lmx1bO88609 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lmx1bO88609 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lmx1bO88609 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lmx1bO88609 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Lmx1bO88609 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC13.91□□□□□ -0.18
Lmx1bO88609 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lmx1bO88609 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lmx1bO88609 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lmx1bO88609 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lmx1bO88609 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lmx1bO88609 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Lmx1bO88609 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC13.91□□□□□ -0.18
Lmx1bO88609 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Lmx1bO88609 AC131709.1-201ENSMUST00000224731 1180 ntBASIC13.91□□□□□ -0.18
Lmx1bO88609 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lmx1bO88609 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lmx1bO88609 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lmx1bO88609 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lmx1bO88609 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Lmx1bO88609 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lmx1bO88609 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Lmx1bO88609 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lmx1bO88609 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lmx1bO88609 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lmx1bO88609 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lmx1bO88609 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lmx1bO88609 Zkscan3-208ENSMUST00000224820 5398 ntBASIC13.91□□□□□ -0.18
Lmx1bO88609 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Lmx1bO88609 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Lmx1bO88609 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lmx1bO88609 Gm11873-201ENSMUST00000117877 1304 ntBASIC13.9□□□□□ -0.18
Lmx1bO88609 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lmx1bO88609 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Lmx1bO88609 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lmx1bO88609 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC13.9□□□□□ -0.18
Lmx1bO88609 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lmx1bO88609 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lmx1bO88609 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lmx1bO88609 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lmx1bO88609 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC13.9□□□□□ -0.18
Lmx1bO88609 Gm27300-201ENSMUST00000184085 97 ntBASIC13.9□□□□□ -0.18
Lmx1bO88609 Gm27335-201ENSMUST00000184758 97 ntBASIC13.9□□□□□ -0.18
Lmx1bO88609 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Lmx1bO88609 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC13.9□□□□□ -0.18
Lmx1bO88609 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Lmx1bO88609 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lmx1bO88609 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC13.9□□□□□ -0.18
Lmx1bO88609 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lmx1bO88609 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC13.9□□□□□ -0.18
Lmx1bO88609 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lmx1bO88609 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lmx1bO88609 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lmx1bO88609 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lmx1bO88609 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Lmx1bO88609 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lmx1bO88609 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lmx1bO88609 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.19
Lmx1bO88609 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
Lmx1bO88609 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC13.89□□□□□ -0.19
Lmx1bO88609 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lmx1bO88609 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lmx1bO88609 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lmx1bO88609 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lmx1bO88609 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC13.89□□□□□ -0.19
Lmx1bO88609 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lmx1bO88609 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lmx1bO88609 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lmx1bO88609 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
Lmx1bO88609 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC13.89□□□□□ -0.19
Lmx1bO88609 Gm14822-201ENSMUST00000122247 291 ntBASIC13.89□□□□□ -0.19
Lmx1bO88609 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Lmx1bO88609 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC13.89□□□□□ -0.19
Lmx1bO88609 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC13.89□□□□□ -0.19
Lmx1bO88609 Gm5253-201ENSMUST00000187104 1025 ntBASIC13.89□□□□□ -0.19
Lmx1bO88609 Gm43575-201ENSMUST00000196420 516 ntBASIC13.89□□□□□ -0.19
Lmx1bO88609 AC225888.1-201ENSMUST00000227184 728 ntBASIC13.89□□□□□ -0.19
Lmx1bO88609 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lmx1bO88609 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lmx1bO88609 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lmx1bO88609 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lmx1bO88609 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lmx1bO88609 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lmx1bO88609 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Lmx1bO88609 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms