Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rnf220Q6PDX6 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Rnf220Q6PDX6 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rnf220Q6PDX6 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC14.62□□□□□ -0.07
Rnf220Q6PDX6 Gm27463-201ENSMUST00000183569 57 ntBASIC14.62□□□□□ -0.07
Rnf220Q6PDX6 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rnf220Q6PDX6 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Rnf220Q6PDX6 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rnf220Q6PDX6 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rnf220Q6PDX6 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Rnf220Q6PDX6 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Rnf220Q6PDX6 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rnf220Q6PDX6 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
Rnf220Q6PDX6 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Rnf220Q6PDX6 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rnf220Q6PDX6 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rnf220Q6PDX6 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rnf220Q6PDX6 Matn2-206ENSMUST00000228570 2798 ntBASIC14.62□□□□□ -0.07
Rnf220Q6PDX6 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Rnf220Q6PDX6 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Mir5122-201ENSMUST00000175004 89 ntBASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Rnf220Q6PDX6 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Gm43570-201ENSMUST00000199951 3688 ntBASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Rnf220Q6PDX6 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms