Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp49Q6P9L4 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp49Q6P9L4 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp49Q6P9L4 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp49Q6P9L4 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp49Q6P9L4 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Usp49Q6P9L4 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp49Q6P9L4 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC17.22■□□□□ 0.35
Usp49Q6P9L4 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Usp49Q6P9L4 Gm8318-201ENSMUST00000182954 872 ntBASIC17.22■□□□□ 0.35
Usp49Q6P9L4 Gm6089-201ENSMUST00000197666 938 ntBASIC17.22■□□□□ 0.35
Usp49Q6P9L4 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp49Q6P9L4 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC17.22■□□□□ 0.35
Usp49Q6P9L4 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp49Q6P9L4 Gm5049-201ENSMUST00000195878 1590 ntBASIC17.22■□□□□ 0.35
Usp49Q6P9L4 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC17.22■□□□□ 0.35
Usp49Q6P9L4 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC17.22■□□□□ 0.35
Usp49Q6P9L4 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp49Q6P9L4 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Usp49Q6P9L4 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp49Q6P9L4 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp49Q6P9L4 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp49Q6P9L4 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC17.21■□□□□ 0.35
Usp49Q6P9L4 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp49Q6P9L4 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp49Q6P9L4 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Usp49Q6P9L4 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Usp49Q6P9L4 Gm25990-201ENSMUST00000102440 86 ntBASIC17.21■□□□□ 0.35
Usp49Q6P9L4 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Usp49Q6P9L4 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Usp49Q6P9L4 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp49Q6P9L4 Gm5682-201ENSMUST00000173402 505 ntBASIC17.21■□□□□ 0.35
Usp49Q6P9L4 Gm44771-201ENSMUST00000206975 626 ntBASIC17.21■□□□□ 0.35
Usp49Q6P9L4 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC17.21■□□□□ 0.35
Usp49Q6P9L4 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp49Q6P9L4 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp49Q6P9L4 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Usp49Q6P9L4 Efs-202ENSMUST00000227037 2540 ntBASIC17.21■□□□□ 0.35
Usp49Q6P9L4 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Usp49Q6P9L4 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
Usp49Q6P9L4 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp49Q6P9L4 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Usp49Q6P9L4 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 22.1 ms