Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Nkx3-1P97436 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Nkx3-1P97436 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC13.27□□□□□ -0.28
Nkx3-1P97436 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Nkx3-1P97436 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Nkx3-1P97436 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
Nkx3-1P97436 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC13.27□□□□□ -0.28
Nkx3-1P97436 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Nkx3-1P97436 Gm13365-201ENSMUST00000121188 973 ntBASIC13.27□□□□□ -0.29
Nkx3-1P97436 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Nkx3-1P97436 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Nkx3-1P97436 Mir6956-201ENSMUST00000183598 62 ntBASIC13.27□□□□□ -0.29
Nkx3-1P97436 Gm45612-201ENSMUST00000211320 160 ntBASIC13.27□□□□□ -0.29
Nkx3-1P97436 Thap2-203ENSMUST00000218989 527 ntBASIC13.27□□□□□ -0.29
Nkx3-1P97436 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Nkx3-1P97436 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Nkx3-1P97436 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Nkx3-1P97436 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Nkx3-1P97436 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Nkx3-1P97436 Hivep3-201ENSMUST00000084306 2973 ntBASIC13.27□□□□□ -0.29
Nkx3-1P97436 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Nkx3-1P97436 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Nkx3-1P97436 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Nkx3-1P97436 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Nkx3-1P97436 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Nkx3-1P97436 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
Nkx3-1P97436 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Gm13332-201ENSMUST00000120451 1398 ntBASIC13.26□□□□□ -0.29
Nkx3-1P97436 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC13.26□□□□□ -0.29
Nkx3-1P97436 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Gm44335-201ENSMUST00000196879 141 ntBASIC13.26□□□□□ -0.29
Nkx3-1P97436 Gm44297-201ENSMUST00000198304 141 ntBASIC13.26□□□□□ -0.29
Nkx3-1P97436 Gm44346-201ENSMUST00000198851 141 ntBASIC13.26□□□□□ -0.29
Nkx3-1P97436 Gm5184-201ENSMUST00000220417 1702 ntBASIC13.26□□□□□ -0.29
Nkx3-1P97436 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Nkx3-1P97436 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Nkx3-1P97436 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Nkx3-1P97436 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Nkx3-1P97436 AC159114.1-201ENSMUST00000220349 266 ntBASIC13.25□□□□□ -0.29
Nkx3-1P97436 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Nkx3-1P97436 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Nkx3-1P97436 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Nkx3-1P97436 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC13.24□□□□□ -0.29
Nkx3-1P97436 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Nkx3-1P97436 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Nkx3-1P97436 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Nkx3-1P97436 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC13.24□□□□□ -0.29
Nkx3-1P97436 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Nkx3-1P97436 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms